RNA id: TCONS_00055384


Basic Information

Item Value
RNA id TCONS_00055384
length 3002
RNA type mRNA
GC content 0.49
exon number 20
gene id XLOC_028548
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9843923 ~ 9867843 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTCCAATAGGAAGGGCCAAACGCAGGCATCTGGGGCCCTCAGAATGTAACGATCTGGCTCAAAGCAACACTGGGAGCCAGTCTCTTACACAGCCATTCAGTGTCAGTCTCAACAACAGAGATCCAAACCAAAGACTTCAGCCTAGGACACCCACGAAAAGAAGAAGACGTGGTACTGTCTCATTCATATCTTCAGATGGTGCAGGACAACAGAAGGGCATCACTGATTTCTTCTCCGTCACTGGAGTCATCAGTTCCAGCCCGCAAAAAGGAACCAAAACTCCTATAAagaatgaggaggaggaggaagaaaaaTGCATCCCACAAGAGGAAAATGTTGAAGAGGACTTCATGGAAGGAATCACAGAGGACATGTTTGATGATGACTTTGAGATGGAAATTGTATCGGTCAAAAAAGAGCAGGCGGAGGTTGCTGTGAACAAAGGAGACGAAGAGGACTCGGTGGAAGCTCTTCCTGATGCCCATTTTGGGCTGCTGGGAGTGCGGGGAGGGCAGGAGGTGCCACAGGGTCACGTCCAGGATCTGCCCGAAGAGATCCTAAGGGAAGTTTTCGCTCTTCTCCCTGCTCAGGATCTCTTTCAGCACATCAGTCTGGTGTGCCGTCACTGGAGAGACGTGGTCATGGACCCCAAGTTTCTTCCTTGGAAGAAGTTGTACTGCAGATACCGCAAACGGGAAACCGAGGGTGTTAAGGAGGTGAGGTCTATCCTGGATGCTAATCAAATTAGCAAAAAGGAGGACCTGTGTCTCCTCAACATGCTGAGGTATATGTCAGGGTTCAAACACAGCAAACGGGTGAATGTGGAGGATGTGTTGACATGTATTAAAAGACACCGGCTGTACACTCACGCTGAAGCTTGTATGAAAGATAGACTCCCAGACATGGTGGATGAAGAGGGTCCAAACCCTTGGTCTGCCATGGCACTGTTGTTGATTTTAGCTGACGGAGTGAAAGATATCCTGGACCTGGTAGCTCTTCTGCGGAGATCTGGCTGTCTGCTGACCACAGGGGGGATTTCTGAATACCTGTGGGCAGTGGCGACTTTACTTCTGGCCATGAGAGAGCGGAATATTAACATAAGCAACAGGTGGCACTACAACATCTTTTATGTCTTGCACTTGATGGAAAATGCATCTCCAACAAGCCTGAAAGACAACAGGCAGCTTATCACTCACGAACAGCAGCAGATTCTCAACCACGACATCCAGCATCATCACGTTGTCAAAATAATGGCTTTTGCAGGCACTGGAAAGACAACCACGCTAGTGAAATATGCTCAGCAGAGGCCAGACCTGCGCTTCCTCTATCTGGCCTTTAACAAATCTGTAGCGGTGCAAGCCAATCGGTTATTTCCACACAACGTCGAATGCAGCACCGTCCATTCAATGGCCTACAGATCTGTGGGAGTGAGgTATAAGAATATCAGGAAACTGTCAAGTAATTTGAAGCCATTTGATGTGGCGTGGGTCTTACCGAAAGGACATGGAGGATTCGTCAATGCTAAAGTCGTGACGCAAACGCTTAACAACTACTGGGCGTCCACAGACCAGCGTGTCGACACGCAACACGTCCCGTTCGAGTACAAGAATACAAAAGGCTTAAGGGAACAGCCAGATGAAGAGGCCAAAAGGACCTTTGTGAGTCTCGCGCAGAACATATGGGACCAAATGGTCGAGATGCGGACCAGAAGAGACCGAGTGTACAACATGACCCATGATGGATACCTCAAACTCTGGCAGCTGGAAAATCCAGTCCTGGACCGATATGATGCCATATTTATTGATGAAGCTCAAGACTGTACGCCAGTCATCATGGACATCATGCTCTCCCAGCGCTGTGGGAAAATCCTGGTTGGAGATCCTCATCAGCAGATCTACACTTTCAGAGGAGCAGTCAACGCTTTGTATtttgttcaacacacacacatctactaTCTCACACAGagcttTAGGTTTGGCTCTGAAATTGCGTATGTTGGTGCTTCAATATTGGACGGCTGTAAAGGAGTGAAACAGATATTGGTTGGCGGCCATCAGGATGGAAGTGTGGCGATTCTGAGCCGCTGTAATGTCACGGTTTTCAGCGAGGCTGTGCGGCTCACTGAAGTCAACCCTAACTGCAAGATCTGCATTGTGGGAGGTGTTGAAAACTTTGGACTGGACAAAATTATGGATATCTGGGTCCTGACACAATCTGAAGACACGCGCAAGAAAGACAACCTCAAGATCAAGGATTTCTTCATCCGGAATTTCTGCAAAGAAAAGATGGGTGGATTCATGGGTCTGAAGGGATACGCCATAGCCTCAGAGGACCGCGAGCTGGAGGGCAAGCTGGCCATGGTGGAAAAATACAACAAACGTATTCCAGAGCTGGTTAGACGCATCTACGATTGTGCCCAGGGAAGTCCACAGGATGCAGATTTTATCCTTGGCACGGTGCATAAATCAAAAGGCCTGGAGTTTGATGTAGTTGTTGTGACCGATGACTTTGCAAAAGTACCATGTGCTCGACACAACTTGCGGAGAGCCGGTGGTTTCAGTATAGATAACGTCCCAGATGACGAGTGGAACCTGATATACGTGGCCATCACTCGAGCCAAGAAAACCCTTTACATCAGTAAGACCATCACCAATCTCATCACATTCACTGGGGAGTATTTCCTGAGATCAGAGCAGACCAGCTCTCTGCTGAGTAAAGATCCAGCGCTCACCTGCTCAACTAAGGACTGTGAGAACCAAATCAGCGCAGACTCCGTCCTCAGCATGTGCAAACTCCCCGTCAGATATATGGACAGTGTGGACGCGGGTGGTGTTCAGTGTTTGACTTGCGTGGAGCAGCGTGTGGGACCTACAGCCTTTCTGCTCTCTCCTCCTGAACGGGTTCGGTCCATGCCATACACGAATGAAAGGATAGACCTGCCTATCAACGTCGCCATGCTCTTGGCCTTGCTGTAAACACCATCATGTGCCCTTTTTTG

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-99 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Orthologous to human FBH1 (F-box DNA helicase 1).

Ensembl:

ensembl_id ENSDART00000091630

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055377 lncRNA downstream 31856 9819357 ~ 9822519 (-) True XLOC_028546
TCONS_00055375 lncRNA downstream 52728 9798053 ~ 9801647 (-) True XLOC_028545
TCONS_00055371 lncRNA downstream 81245 9769071 ~ 9773130 (-) False XLOC_028544
TCONS_00055359 lncRNA downstream 202407 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055357 lncRNA downstream 246921 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00058069 lncRNA upstream 38605 9906081 ~ 9909371 (-) False XLOC_028550
TCONS_00055387 lncRNA upstream 40393 9907869 ~ 9909371 (-) True XLOC_028550
TCONS_00057327 lncRNA upstream 479262 10346738 ~ 10348612 (-) True XLOC_028551
TCONS_00058070 lncRNA upstream 881501 10748977 ~ 10752573 (-) False XLOC_028554
TCONS_00058072 lncRNA upstream 881501 10748977 ~ 10752722 (-) False XLOC_028554
TCONS_00055379 mRNA downstream 2057 9843923 ~ 9852318 (-) False XLOC_028548
TCONS_00055378 mRNA downstream 18033 9824063 ~ 9836342 (-) True XLOC_028547
TCONS_00055376 mRNA downstream 31856 9813753 ~ 9822519 (-) False XLOC_028546
TCONS_00055374 mRNA downstream 43376 9784301 ~ 9810999 (-) False XLOC_028545
TCONS_00055373 mRNA downstream 73444 9776260 ~ 9780931 (-) True XLOC_028544
TCONS_00055385 mRNA upstream 13171 9880647 ~ 9891874 (-) True XLOC_028549
TCONS_00055386 mRNA upstream 33640 9901116 ~ 9909371 (-) False XLOC_028550
TCONS_00055388 mRNA upstream 707346 10574822 ~ 10599062 (-) True XLOC_028552
TCONS_00055398 mRNA upstream 944014 10811490 ~ 10826575 (-) False XLOC_028555
TCONS_00055399 mRNA upstream 945785 10813261 ~ 10835620 (-) False XLOC_028555
TCONS_00055328 other downstream 1266467 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 1712909 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1978431 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 794085 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 1739282 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 1740720 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 2407638 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 2545943 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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