RNA id: TU2410910


Basic Information

Item Value
RNA id TU2410910
length 1079
lncRNA type sense_over
GC content 0.38
exon number 3
gene id ub2v2
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14106590 ~ 14122847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGAGTTAAAGTTCCACGTAATTTTCGCTTGTTGGAAGAGCTTGAAGAGGGTCAGAAAGGTGTTGGAGATGGGACAGTCAGCTGGGGCCTTGAAGACGATGAAGATATAATGCTAACACGGTGGACGGGCATGATCATCGGACCGGCACGAACTAATTATGAGAACAGGATATACAGTCTGAAAGTGGAATGTGGTCCAAAATATCCTGAATCACCACCGGTCGTTAGATTTGTAACAAAAATTTGCATGAATGGGATAAATAATTCCAATGGGATGgtgGATACACGAAGCATACCAATTCTATCTAAATGGCAAAATTCTTATAGCATTAAAGTTGTTCTTCAAGAGTTAAGGCGTCTAATGATGTCCAAGGAGAATATGAAGCTCCCACAACCACCAGAAGGACAAACCTACAGCAATTAATTGTTCACGGATTGTTTACTTTTGACCCCTATTGTCTTAAACCTTATTCTCTTATAAGAAATATTCCCTCCACCATTCCAAGAATTTAGACAGAGCCCGGTTGAATATTCCTAAAATTGGACATTCCTTCTAGATAGCTCATTCTAGAATGTCCCCACTGAGAGTGAAATGATGTTAAGAACACAGTTATTCCTCTTCTATTGACCTTAGTGTGACCATTCACTTTCTGATCAAGagatgtgtcaagttggcttCCCAAGAGAAGCATAAGCACCAAGTGGATACCCAAGTCAGAACAATTTCTTTCGAATGGCAGGTCACTGAAATAAAGAATTGAGGTGTGTGTATGATGGCATGCTCCAACTAAGAAATAGACAAAAATACACCAGTTGTAATTTGTTGGTACATTGAATTATTCTGAAGATTAAAATGTGGCTGTAGGCCAGACGTAGTGTCACCGGGTGTGAAGGatttgttatatattttttatttgacacaATGCCAATGTTTCTGTTCTGCTGCTTTTTGACTTGTAACAGACCTTAAAGCCTGTTTGGTTCCGAAAAAAATACCCCTTGCATTTAACTTTTAGTGAAAATGACAAGTGTATGTATGACATTGTGATTTTTCTGACATTAAAATCAATATCTGAA

Function

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2410629 lncRNA downstream 74876 14031506 ~ 14031719 (-) True G2107707
TU2410588 lncRNA downstream 109695 13988110 ~ 13996900 (-) True G2107667
TU2410534 lncRNA downstream 137132 13944492 ~ 13969463 (-) True sntg1
TU2410494 lncRNA downstream 249768 13856520 ~ 13856827 (-) True G2107588
TU2410443 lncRNA downstream 288650 13800265 ~ 13817945 (-) True G2107538
TU2410968 lncRNA upstream 64138 14176142 ~ 14177301 (-) True G2108016
TU2410975 lncRNA upstream 83279 14195283 ~ 14195572 (-) True G2108023
TU2411105 lncRNA upstream 261399 14373403 ~ 14385685 (-) True G2108143
TU2411132 lncRNA upstream 297734 14409738 ~ 14410075 (-) True G2108169
TU2411136 lncRNA upstream 299162 14411166 ~ 14411482 (-) True G2108173
XM_021589231.2 mRNA downstream 136748 13911310 ~ 13969847 (-) False sntg1
XM_021589215.2 mRNA downstream 339188 13545290 ~ 13767407 (-) True LOC110508590
XM_021589214.2 mRNA downstream 424966 13545290 ~ 13681629 (-) False LOC110508590
XM_036966890.1 mRNA downstream 424968 13545290 ~ 13681627 (-) False LOC110508590
XM_021589208.2 mRNA downstream 625388 13287034 ~ 13481207 (-) True LOC110508588
XM_036966702.1 mRNA upstream 11016 14123020 ~ 14137872 (-) False LOC110508600
XM_036966700.1 mRNA upstream 11016 14123020 ~ 14137882 (-) False LOC110508600
XM_021589236.2 mRNA upstream 11016 14123020 ~ 14137988 (-) False LOC110508600
XM_021589235.2 mRNA upstream 11016 14123020 ~ 14138016 (-) True LOC110508600
XM_021589233.2 mRNA upstream 29120 14141124 ~ 14227741 (-) False spidr
TU2408125 other downstream 2606523 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 3212515 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 3398096 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 3899919 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 3991198 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 1427764 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 1491681 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 1591332 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 2687386 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 3144204 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile