RNA id: XM_036966700.1


Basic Information

Item Value
RNA id XM_036966700.1
length 3006
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110508600
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14123020 ~ 14138016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgtagctagctatttCTAAGGTTTTCAAAAGCTAAATGAACTAGGTCGttgtttattaaatgttttatgttAGAGCAAATTCAGATGACCTAATTTATGTGTTTGGGAGTGTTCAccagattttttaaataaaatcagACTGGGTTTCCTCGTCAACCAGATTTCTTTTCTAGGACCTGTGATCATTCAGAATGTCTTCACCAACATCAACTCCCGGTAGACGCAAGCGCAACAGGGATGACATTCCAGCCACTCCTAAGTCGACAGCAAAAGctGGCAGTGATGGCCTGGTCTCCCCTCCTTCCCAGCGGCGGAGAGGTCAGGACTCCTCCAACGGGGATCTGCCGGCCATGCCCACGTCTCCAGGCACAGACATTGCCAGCCCTGCTGTCCATGACACCTCTCTGTTCTCCAGCCCGCGCCGCTCAGTTCTCCCAAGTGAGGTGGACATGAGCTCCCCTCTGATGTACGGGACTCCGAGCTCCAGGGTGGAGGGCACCCCCCGTAGTGGTGTGGGTGGCACCCCAGCCAGACAGCGCCCTGACCTGGGCTCCATCAGGAAGGCCCCCCAGGTGGACCTTCACTCTGAGCCGCCAAGTGCAGATGGTGCAGTAGCCAGTGAGCAGGCACTGGGTCAGAAGCTTGTTATCTGGGGCACTGATGTCAACGTGGGAACGTGCAAGGAGAAGTTCCAGAGATTCCTGCAGAGGTTCATTGACCCGGCTTCCAACGAGGATGAGAATGCTGGTTTGGACCTGAATGAGCCTCTCTACATGCAGAAGCTGGAGGAGATCAGTGTGGTTGGTGAGCCTGTGCTGAACGTCAACTGCAGCCATGTGCAGTCCTTTGACGCAGACCTGTACAGGCAGCTCATCTCCTACCCCCAGGAAGTCATCCCCACGTTTGACATGGCTGTCAATGAGCTGTTCTTTGAGCGTTTCCCAGACTCCATCTTGGAGCACCAGATCCAGGTGCGGCCATACAACGCCCTGAAGACCAGGAACATGAGGAGCCTGAACCCTGAAGACATTGACCAAATGATCACCATCAGCGGCATGGTGATCAGGACCTCCCAGCTGATCCCAGAGATGCAGGAGGCCTTCTTCCAGTGCCAGGTTTGTGCTTTTTTTACCCGCGTGGAGGTGGACCGCGGCCGCATCGCAGAGCCTGCCGTGTGCCGCAACTGCAACACCATCCACAGTCTGGCCCTCATCCACAACCGCTCAGCCTTCTCCGACAAACAGATGATCAAAGTGCAGGAGTCTCCTGATGACATGCCTGCTGGGCAGACCCCTCACACCACCATAGTGTACGCTCACAACGACCTGGTCGACAAAGTACAGCCAGGAGACCGCATCAACATCACTGGTATCTACAGAGCGGTTCCTATGCGTGAGAACCCTCGCCAGAGCAACGTGAAGTCTGTGTACAAGACCCACATCGATGTCATCCACTTCCGCAAGACTGATGAGAAGCGCCTTCACGGGCTGGATGAGGATTCCGACCAGAAGCTTTTCACTGAAGAGCGCGTCCAGATACTGAAGGAGCTGGCCTCCAAACCAGATGTATACGATCGTCTCTCCTCCGCCCTGGCCCCCAGCATCTATGAACACGAGGACATCAAAAAGGGTATTCTTCTCCAGCTGTTTGGGGGCACCCGTAAAGACTTCAGCCAGACAGGCCGCGGTAACTTCCGTGCCGAGGTAAACATCCTGCTCTGTGGAGACCCCGGCACCTCCAAGTCCCAGCTGCTGCAGTACGTGTTCAACCTGGTGCCCCGCGGTCAGTACACGTCTGGGAAGGGCTCCAGCGCCGTGGGCCTCACAGCCTACGTGATGAAGGACCCAGAGACCAAGCAGCTAGTGCTGCAGACGGGGGCCCTGGTGCTCAGTGATAACGGGATATGTTGTATTGATGAGTTTGACAAGATGAGCGACAGCACGCGCTCTGTGCTGCATGAGGTCATGGAGCAGCAGACTCTCTCCATCGCCAAgGCGGGAATCATTTGCCAGCTCAATGCACGCACTTCCGTCCTGGCAGCAGCCAATCCCGTGGAGTCTCAGTGGAACCCCAAGAAGACGACCATTGAGAACATCCAGCTCCCTCACACACTGCTCTCAAGatttgatctgatcttcctgATGCTGGATCCTCAAGACGAGGCATACGACCGTCGCCTGGCTCACCACCTGGTGGCGCTCTACTACCAGAGCGAGGAGCAGATCGAGGAAGAGTTCCTGGACATGGCTGTGCTGAAGGACTACATTGCATACGCTCGCACTTACATCAACCCCAGACTGAACGAAGAAGCCAGCCAGGCACTCATTGAGGCCTACGTGGACATGAGGAAGATTGGCAGCGGGCGGGGGATGGTGTCTGCCTACCCCAGGCAGCTGGAGTCTCTGATCCGCCTGGCTGAGGCCCATGCCAAGGTGCGCTTCTCTGACAAGGTGGAGACCATCgacgtggaggaggccaagaGACTGCATCGCGAAGCCCTCAAGCAGTCCGCTACAGACCCCAGGACTGGCTTTGTCGACATCTCCATCCTCACAACCGGAATGAGTGCCACGGCCCGTAAGCGTAAGGAGGAAGTGGCCCGGGCCTTGAAGAAAATGATCCAGTCCAAGGGAAAGACCCCTGCCATGAAGTACCAGCAGCTGTTTGATGACCTCCGAGGACAGTCTGAAGCTGCAATAACAAAGGACATGTTTGAAGAGGCTCTGCGCGCCCTGGCAGATGAAGACTATCTGACTGTCACTGGAAAGACTGTTCGCCTGCTGTAAAGAAACTCACTCCTTCCCTTACCTTGTACAGTCATTGCATTTGCACTTATTTCCCAGAACCAGCAGCTTTCTCTACAGAATACTGATCTGTGAAGAATGTTTGACCACATTAATGTTAATGACTCAGTCAGGACTAGCattgtatgcttcatgattactGATAGTGCTTGGTTGCTTTGATGTTTTGGTGAGCAATAAAGAAATGCTTTTATATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2410924 lncRNA downstream 5854 14065024 ~ 14117166 (-) True G2107976
TU2410909 lncRNA downstream 11016 14106595 ~ 14112004 (-) False ub2v2
TU2410910 lncRNA downstream 11016 14106595 ~ 14112004 (-) True ub2v2
TU2410629 lncRNA downstream 91301 14031506 ~ 14031719 (-) True G2107707
TU2410588 lncRNA downstream 126120 13988110 ~ 13996900 (-) True G2107667
TU2410968 lncRNA upstream 38260 14176142 ~ 14177301 (-) True G2108016
TU2410975 lncRNA upstream 57401 14195283 ~ 14195572 (-) True G2108023
TU2411105 lncRNA upstream 235521 14373403 ~ 14385685 (-) True G2108143
TU2411132 lncRNA upstream 271856 14409738 ~ 14410075 (-) True G2108169
TU2411136 lncRNA upstream 273284 14411166 ~ 14411482 (-) True G2108173
XM_021588584.2 mRNA downstream 173 14106590 ~ 14122847 (-) False ub2v2
NM_001165240.2 mRNA downstream 500 14106597 ~ 14122520 (-) False ub2v2
XM_021589231.2 mRNA downstream 153173 13911310 ~ 13969847 (-) False sntg1
XM_021589215.2 mRNA downstream 355613 13545290 ~ 13767407 (-) True LOC110508590
XM_021589214.2 mRNA downstream 441391 13545290 ~ 13681629 (-) False LOC110508590
XM_021589233.2 mRNA upstream 3242 14141124 ~ 14227741 (-) False spidr
XM_021589234.2 mRNA upstream 3242 14141124 ~ 14227741 (-) False spidr
XM_036966698.1 mRNA upstream 3242 14141124 ~ 14227741 (-) False spidr
XM_036966699.1 mRNA upstream 3242 14141124 ~ 14227742 (-) True spidr
XR_002471334.2 mRNA upstream 96827 14234709 ~ 14243467 (-) False mapre2
TU2408125 other downstream 2622948 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 3228940 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 3414521 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 3916344 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4007623 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 1401886 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 1465803 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 1565454 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 2661508 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 3118326 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile