RNA id: XM_021589233.2


Basic Information

Item Value
RNA id XM_021589233.2
length 3525
RNA type mRNA
GC content 0.54
exon number 20
gene id spidr
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14141124 ~ 14227742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCGGAAAGCTTCACGTGAACAAACGTCGCCAGTGGCGCGCCAAGAAGAAAAGTTGTGTAGAAGGCAGCTACCGTTAGTGGTCATTTCATATACTGGCTAAAATACTGTATATCACAATATTTTAATATGTTTGGACATTTTATGTCATACCCACTCATACAAAACGACATGTAACCATTTGCCAACATGCCTTTTCAAGGAAAGcgCAAAAGATATTCCAAGGACATACAGTGTATGTTATTTCCTGATGTCAAAGTTGGTGTCAGAAAAGTGGGACGAGGGCCTTCAATCACTGACAGTTCTGCTACCAAGTCCTGGGAGAGTTGTGGAGACAGCTTTTTGGACACTCCTGTGATAAAGAACCTAAGTTCATCTGGGAACAAATGGCGAGCTGTACGACGACTGGCACAGTCACCGGCACAAGTGCAGTGCAGTGGTCTGCGGTGTGATGAGGACCCAGTGCACATCGCCTGGAGCTCCAGTGAGAGTGAGTCTTCTGACAGTGAGCCCCAAGGCCAGCAGCCTCCTCCAACTCCCCCCAGCAGCATTGTGGCTCAGGTGCACCGCGGGCCCGGGAGACAAGGAGCCTCCATCCAGTCCTACAGCCGAGCCCAGCGCATGCTCAGCACTGAAACAGatGAGCTTTCGACGATAGACACGGATAGCGATGTGGATGAGGCTGAAGATGATCAGGGAAAGAAGGAGGATGGTGTGGGGGAGATCTCTGACTGTGAGTCGGAGCCCTGCGCTCGGGAACCGAAAGAATCATCACCTAAACCTACAACTGTGACAGACACTGACATCTCAGACTACCTGtctgatggagaggaagagagccaTGACACCCTGAGCCTGAACAGACTGGAGGCTGGGGTTGTGGCTGAATGTCCTCTGCAGGCTGGGGAAGGGGAGGGCAGCAGAAGGTCAGTCGGTGACTGGGTCAGGTCCGCTCAGGCAGCGCTGCAGACGCcccagaaacagacagacaggaactccAAGACCCCAGAGGACTCCAGCAAAAAGAAAAGGACGTTTCAAAGTGGCGGCATGGCAGAGCGACTGAACCGACTCCAGTGCAGACAGAGGTCAGCCATCAGCTTCTGGAGGCACCAGTCCATCTCTCACACTTCTACTACAGCCACAGTCGATAAGCCTGGGGTGCTGGTACTGGAGGTCCTGTCAGTCCAGGAGGAGAGCTGCATGCAGCTGGCCCTGTGTGAGCAACACCACCCCCCTGCTACAGGCCACCACAGGCCTCcatccaacaccaccaccactatgaCAAGACCTGAACAGCACAATCCCTCTGCTACAGaccacaccccccctctctccaccagaAACGGAGCTCGGGTCCTGGTACTGTTCAGTAAGGAGACGACTGCTCAGCTCATGCCTGTGCCTCGAGACCTCATCCATATATACCCACCATGGCAAAGTCTCATGATTGAGGGCCAACATAATAGAATTATTCTCAACACACACTTCAGCCAGAAGGTATACTCTGACACCAAGCAAACCAGCATGTCCCTCCCCAGAGCCCTTGTTCCAGTGGAGAGATGCAACCCATACTCTCTGACCAGGTCATTTGGCCAGCTTGAGATCAACAAGACTTCACCAGAGGGAGATGGCACGGTCAAACAGTCTTTATGCAGCCAGGGTGGCCCAGGTGCAGCCAGCAGCAGAGGGTGTCATTCGCTCCTAGAGGCCATCGAGGGCCTGGGCCAGGCTGGGTCAGTGGGGCaggatgtggaggtggtggttCAGAGGGTCTACTGTACCCCCATCAGGGAGCGCTCCACTGGGGCTTCACTCAAGTCCAGAGCTCCTGGTCGATCCCCTAGAGTGCCGCCTCCTCTCCAGAAGGGCAAGAGCAGgCTGTGTGTGCTGGTCCAGGACGGCTATGGGATGTTCAGCATGGTCCAGCTCCACCCTCTGCCGTCTGAggaccctctccacctctacaccAGGAAGTGGGAGGGCCGGACCTGCATCCTGCGAGCCATCAAAGTGGTGCAGCGGGTCACTCGGGAAAGGTGGACCAGACTCTTCAGCCTGATAGACAGCCTCTGGCCACCAGTGATGCCTTTCAAAGTACTTGGAGAAAACCAGAGCTGTCAAGGTgACAGCAGACATAAAGGCCCAGCCCCAAGCTTCTGTTATCTGCTGTCAGGCCAAGAGGGCTCTGTGGAGCCTGTAGAGGGACAGCCTTTGTCCTCTCTATACCTGCCTCCTACAGAACAAACTCTCAGAGACATACTGCAGTGTGAGCTCAACAGCCATCGTTGTAGCTTTGTCGCCACTGTCATCTACAAGAGAACGCAGtctCAGAGTAGTGATCAGAGCCCAGGGGAGGTTTGGCTGGTGGTGACTGACCCCAGTTTGCAGGAGGAGCAGCAGTCCGATGGGCCACCATGCAGACGAacgctggctgtgtgtgtgaccacTTCCTGTGTGCTCACTTCCTCTGTCGCCAAGGCAATAAGCACCCCCAGCACCTTCCGCTTGTCATTCAGGGACGCAGTCAGAGAGCATGGTGGGATCCTGTGTGTGGAGCAGTCAGTTGTGCAGCTGCGGCCTCTGGTATCAGTGTGCTGCCCACATACCGAGAGCACGCTGGGCTCAGGGTCTCTGTCATTGTCCCAGGCAAAGCCCTTACCTCAGCCCCTACCTCAATCCCAGCCCCATGTCCTTCCTCAGGCCTTACCACAACATGTGACGCTGGATCCCCTGGGTCCGGAAACACCACCCAACTCCCTCTGCACGTTCTCGGGTGTGATAGTTGGTGTGGATGAGGACACGGCCTACTCCTGGCCAGTCTGCAGCCTGTGTGGGAGTGACCGCTTGGAGATGGCACCCCAAAAGCCTCAAGCATTCCTTTGTGTTGCTTGTGATTCACTGGTTGACCAACCAAATATGAACATGCAGCTTGAAGTGTTCATGAATTGTTCTACACTGAGAGACTTCACTGTGAAAGTAAAGCTTCAGCAGAGCACCATCATGTCTGTGTTGAACTGTGCAGCCTCTGGCCATGAgTTCCCAGGTTACGAGGTGGAAAATGTGCTGGGGAAGGAGGTGGGCCCCCTCAGCGCTTACGTCCGCGTGGTCACCAGGAAACCTGCCCTGTCGATCGGCCTGGAAGAGATCTGCCTCTGAGGCTGTCAAAGTGTGGAGTGGGATCCCGTGAAATCAATCTGTAGGACTAGGAGGTCTCCTCAGCCCAGCCAGGCCCAGTCTCTCTGTACAGCGCATGAATAGTTGGCTGGAAAAAATAGATCTGTTTGTGTGTTACTGATATGTTAGGACCCTGGAGATGACAGCCCAAGGTTAGAACTGAAGGACCAGAGAGGAGTAACATATGTCAGACTTTGTCACGTGGGTCCAAATGGTGACTGTAAAATATGCCTGTTTGCTGTATATAGCCGCACATTTCTTTCAAAGTGTTCCCTTGAATATCTCCCCCCTAATCTTTCTCTGAAGATGAATGGTGCTTATACTGTGTCAATAAACCTTGTATTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2410924 lncRNA downstream 23958 14065024 ~ 14117166 (-) True G2107976
TU2410909 lncRNA downstream 29120 14106595 ~ 14112004 (-) False ub2v2
TU2410910 lncRNA downstream 29120 14106595 ~ 14112004 (-) True ub2v2
TU2410629 lncRNA downstream 109405 14031506 ~ 14031719 (-) True G2107707
TU2410588 lncRNA downstream 144224 13988110 ~ 13996900 (-) True G2107667
TU2411105 lncRNA upstream 145662 14373403 ~ 14385685 (-) True G2108143
TU2411132 lncRNA upstream 181997 14409738 ~ 14410075 (-) True G2108169
TU2411136 lncRNA upstream 183425 14411166 ~ 14411482 (-) True G2108173
TU2411192 lncRNA upstream 185365 14413106 ~ 14413323 (-) True G2108229
TU2411196 lncRNA upstream 192651 14420392 ~ 14420615 (-) True G2108233
XM_021589235.2 mRNA downstream 3108 14123020 ~ 14138016 (-) True LOC110508600
XM_021589236.2 mRNA downstream 3136 14123020 ~ 14137988 (-) False LOC110508600
XM_036966700.1 mRNA downstream 3242 14123020 ~ 14137882 (-) False LOC110508600
XM_036966702.1 mRNA downstream 3252 14123020 ~ 14137872 (-) False LOC110508600
XM_021588584.2 mRNA downstream 18277 14106590 ~ 14122847 (-) False ub2v2
XR_002471334.2 mRNA upstream 6968 14234709 ~ 14243467 (-) False mapre2
XM_021589238.2 mRNA upstream 9337 14237078 ~ 14243467 (-) False mapre2
XM_021589237.2 mRNA upstream 9337 14237078 ~ 14243477 (-) False mapre2
XM_021589239.2 mRNA upstream 9337 14237078 ~ 14252720 (-) True mapre2
XM_036966269.1 mRNA upstream 31766 14259507 ~ 14284788 (-) False dtna
TU2408125 other downstream 2641052 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 3247044 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 3432625 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 3934448 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4025727 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 1312027 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 1375944 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 1475595 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 2571649 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 3028467 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile