RNA id: XM_021589237.2


Basic Information

Item Value
RNA id XM_021589237.2
length 2570
RNA type mRNA
GC content 0.42
exon number 7
gene id mapre2
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14234709 ~ 14252720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTACGTCATCAGAGTCAGATTTGTGAAGAATAAGCAGACAGGAGAACGAGCCCGAGGTGCGGCACTTTATATCGCATCGTCCTTtcatagagagagaacaggtaatCTGTTCAATATTTTAGAGACCCAATGCCAGGGCCCACCCAAGCACTGTCCCCAAATGGAGAGAATAACAACGACATCATCCCAACGGATGGATCCAACTGCATTCCTTACAGAAAAAATACAGTGCGAGGAGAGCGCGCCTACAGTTGGGGAATGGCGGTCAATGTATATTCTACCTCAATAACCCAGGAGACTATGAGCAGGCATGACATCACTGCCTGGGTTAACGATCTTCTCGGTCTGAACTACACTAAAGTGGAGCAGCTCTCCTCAGGAGCGGCCTACTGCCAGTTCATGGATTTGCTCTTCCCTGGCTGCGTCAGTCTTAAGAAGGTTAAGTTCCAAGCTAAATTTGAGCATGAGTACATTCACAACTTCAAGCTACTGCAGGCCTCCTTCAAGAGAATGAATGTGGACAAGATTATTCCTGTGGAAAAGCTGGTGAAAGCCAGATTTCAGGACAACCTTGACTTCATCCAGTGGTTCAAGAGGTTCTTTGACGCCAACTACGACGGTAAAGATTACGACCCACTTCAGGCCAGACAGGGTCAGGATGCCATCCCCCCACCTGACCCCGGTGAGCAGATCTTCAACCTGCCAAAGAAGTCTCAACACCACGCAGCCAGCTCCCCCACTGCAGGAGCAACCAGGGCGAGCGCAACAACGCCGAAACAAAACCCTTGCAGCCCCCATCCGTCCTCCAGACCATCTTCAGCCAAAAGAATCCCAGTTGCAACGACAACTCCGGCCAAAGGAGAGCGGGAACTGGAAGCACAGGTCACATTGCTCAATGACCAGGTGAACACATTAAAACTTGcactggagggggtggagaaggagagggatttTTACTTTGGAAAGCTGCGGGAGGTGGAAGTGCTGGCACAGGAGCAAGGTCAGGAGAGCGCACAGTTCGTGGAGAGGCTAATGGAGATCCTGTACTCTGCAGACGAACAGGAAGGtgcaggagagggggaggacgtGGACCCAGGGGTCCATGAAGAAGAGGTTCCTGATGATCAGCAGGATGAGTACTGACTGCCATCCCTCCGTGTCCCCACCACCATGCCCTTTTACTTTGTGAGAACTTTGTTACAGGTatcatttttttgtttctttttattacatttttttttctcctaaTGGTTTGTTTCTTTTTCGTTCTCTTGAAGACTGAGCACATGAAGCAACCTCGTGAAAAGAAGCACGACcctcgttttttattttttagatatCCCTCAGACGTTCTGCGTTCTGTGTGTTTTGTTGACTGTCGGTGAAATGCTGTGGCCAGGTTGCTGTTATTACATACCGCCACATGCAGAAAAGCTCAGACCATCACAGAAGTTTCCAAGGCCATTGAAAAAGGGTGAAAAAAGTATGTAATTCAAAATTCTCTATTTGATGAAATTGTAATATGGAGTAGACCGTGTTTTTTATCTGACAGCACGTGTTAAGTATGTTGCCAGTCTCGGTCGGTCCCATGATCCATCCATTATGTACGTTGTTTCAAAGTTATTGTTTATTTTAAGACTTGTACATATTAATCATGAGAACGCAATAAGCTAAACCCTGAAGGGCCGGTAGTAGCTCCTATTTAACCTTCCTCCATATGTTGCACTGTAATTTGACTCTGGAATGGACAATCTGTCCATAGATTCTCACAATTCACACTTACAAATTGAATTGCAAAAATTATATTTATTAAAAACTAAGGAGACTTGATATTGCCTTTATGCGATGGGAGGCAGTTTAGTCCATGAGAATTATTAATGAAAAGTAGTAGTAAGTTAGACAAATTATGAGTAGCATGTGACTGTCTTCAGCAATTCAAAGAATTTAGATAATCAGTGCGTACTCAAAAATGCCTTATTTGGTGCTACAGTGACAGAAACAAGGTTGATTCATCAGTATGGCTTCATCATACGGGAAAGGGTTAGTGTAGACTAGAATGATCacagtaaacattttttttaaacttcaagAGCAACTAGCCACCATCGTATTCAATGGAAGTCGGGTatatttcagatgttttcatGACTTTTGAACCACAGGTCTTAGGGAAAGTTGTGAGTCAGTTCACTGAGTAATTTGACATACTATATTCCAAGTACGTATATTGTATACCCTTTCTTAATGTTGCATTTATTCTTATTGAACTCAGCAGTGCACCATAATACTTTAGTCGTATGTTGTGTAAATGAAAAGGAATGTAAACATGTATTGTCAATAATTATAAATAGATCATGTTTTTCTTCTGATGTCCCACTCATTATGCATTCCCCAAAATGTGTTGCATGTTTGCATTTTATTTGTGAATAACTTGACCTGCTTTTTACATATTTAATAAAAAACAACTATGTTAAGTGAGCTGTGTTTTGTATGTTTAACTTGCTATTTCAAACTGTTGAGATTTGGATGGATTTGCTGTAATAAAACCTTTCACCTTTTCAGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2410975 lncRNA downstream 41506 14195283 ~ 14195572 (-) True G2108023
TU2410968 lncRNA downstream 59777 14176142 ~ 14177301 (-) True G2108016
TU2410924 lncRNA downstream 119912 14065024 ~ 14117166 (-) True G2107976
TU2411105 lncRNA upstream 129926 14373403 ~ 14385685 (-) True G2108143
TU2411132 lncRNA upstream 166261 14409738 ~ 14410075 (-) True G2108169
TU2411136 lncRNA upstream 167689 14411166 ~ 14411482 (-) True G2108173
TU2411192 lncRNA upstream 169629 14413106 ~ 14413323 (-) True G2108229
TU2411196 lncRNA upstream 176915 14420392 ~ 14420615 (-) True G2108233
XM_036966699.1 mRNA downstream 9336 14141124 ~ 14227742 (-) True spidr
XM_021589233.2 mRNA downstream 9337 14141124 ~ 14227741 (-) False spidr
XM_021589234.2 mRNA downstream 9337 14141124 ~ 14227741 (-) False spidr
XM_036966698.1 mRNA downstream 9337 14141124 ~ 14227741 (-) False spidr
XM_021589235.2 mRNA downstream 99062 14123020 ~ 14138016 (-) True LOC110508600
XM_036966269.1 mRNA upstream 16030 14259507 ~ 14284788 (-) False dtna
XM_036966265.1 mRNA upstream 16030 14259507 ~ 14285866 (-) False dtna
XM_036966266.1 mRNA upstream 16030 14259507 ~ 14285866 (-) False dtna
XM_036966270.1 mRNA upstream 16030 14259507 ~ 14285866 (-) False dtna
XM_036966271.1 mRNA upstream 16030 14259507 ~ 14285866 (-) False dtna
TU2408125 other downstream 2737006 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 3342998 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 3528579 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 4030402 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4121681 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 1296291 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 1360208 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 1459859 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 2555913 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 3012731 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile