RNA id: LOC110508166



Basic Information


Item Value
RNA id LOC110508166
length 1280
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110508166
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14516805 ~ 14520970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGACTCGGGTCAATTTCAAAACTTGTTTATGGGTTTCTCCGTGCAAGTTTTTCACTTACTTCAAGGGTGTTGCGGTGACTGATACCTGCCTGGTGAACGTTTATCCCATTGGTGAAGATTACTATGTCATCACAGAAACCAATTACATCACTAAAGTCAACACTGACACACTGGAGACACTGAAGAAGATCAAAATTGAGAACTGCGTCAACATCAATGGAGTGACAGCCCACTTGCACGGAACAGTGTTCAACATTGGAGACTGCATGGGAAAAGGAGCGTCACTGACCTACAATGTTATCAGACCTACAATGCAAGCTGAAGACCCCATTGAAAAGTCCATGGCTGTGGTGCAATTCCCCAGTGCCAAGAGGTTCACGCCCTCCTATGTGCATAGTTTTGGCATGTCGTAGAACTACATTGTCTTCGTGGAGACCCCGGTGAAAATCAACCTTAAGTTCCTGAGTGCCTGGAGCATCCGAGGCTCCAACTACATGTATTGCTTTGAGTCCAATTAGGTTTTTGGTACGTTGTTCCACATCGCCAGAAAGGACAttggaggaggacaaggagagtatGTTGACCATAAGTTCAGGGCTGCTCCTATCAACCTGTTTCATCACATCAACACTTACGAGGAACAAGGCTTCATCGTGGCTGAAGTGTATACATGGAAAGGatgggagaTTGTTTACAACTACCTTTGGCTGGCCAACCTGCGTTCCAACTGGGAGGAGGTGAAGAATGCAGCCATGATGACTCCTCAGCCAGAGGTCAAGAGATACGTCATCCCAGTGGACATCCACAGGGAGGAGCAGGGACAGAACCTGATACACCACGGCAACATCGGTGATGTGTTCTGACGGGACCATCTGGCTGGAGCCTGAAGCGCTGTTCTCTGGGCCTCACCAAGCCTTTGAGTTCCCTCAAATCAACTATTAGAAGCACGGTGAGAAGAACTACACATATGCCTACGCCTCAACCACTTCAGGGTTGAGTCTCTCTGTCCACTTGCGGCTGTAGATTATCAAGTTGAACGTGAAGACCAAGGAGACCTAGGTGTGGCAGGAGCCAGACTCCTACCCCTCAGAGTCCATTTATGCAAACCCCTGATGGagtggatgatgatgatgGTGTCCAGTTGACCATTGTGGTGGCCACCGGGGCCCAGAGGCCAGGGTacatgctgatcctcaacgccAAGGACATGTCGGAGATCGCCAGGGCAGAGGTGAAGTGCTCTATGCCGGTCACCTTCCACGGAATGTACAAGCCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2411283 lncRNA downstream 1131 14513766 ~ 14515674 (-) True G2108302
TU2411281 lncRNA downstream 1376 14513427 ~ 14515429 (-) False G2108302
TU2411279 lncRNA downstream 1414 14513223 ~ 14515391 (-) False G2108302
TU2411278 lncRNA downstream 3800 14509768 ~ 14513005 (-) False G2108302
TU2411267 lncRNA downstream 11595 14504905 ~ 14505210 (-) True G2108298
TU2411301 lncRNA upstream 4488 14525458 ~ 14525717 (-) True G2108319
TU2411568 lncRNA upstream 87523 14608493 ~ 14611820 (-) True G2108545
TU2411597 lncRNA upstream 158943 14679913 ~ 14680244 (-) True G2108574
TU2411600 lncRNA upstream 163176 14684146 ~ 14696693 (-) True G2108577
TU2411720 lncRNA upstream 329030 14850000 ~ 14850206 (-) True G2108693
XM_036966267.1 mRNA downstream 224256 14259507 ~ 14292549 (-) True dtna
XM_036966265.1 mRNA downstream 230939 14259507 ~ 14285866 (-) False dtna
XM_036966266.1 mRNA downstream 230939 14259507 ~ 14285866 (-) False dtna
XM_036966270.1 mRNA downstream 230939 14259507 ~ 14285866 (-) False dtna
XM_036966271.1 mRNA downstream 230939 14259507 ~ 14285866 (-) False dtna
XM_021589259.2 mRNA upstream 94947 14615917 ~ 14625901 (-) True LOC110508608
XM_021589264.2 mRNA upstream 108565 14629535 ~ 14652587 (-) False LOC110508612
XM_021589265.2 mRNA upstream 108565 14629535 ~ 14652591 (-) True LOC110508612
XR_002471335.2 mRNA upstream 240507 14761477 ~ 14762622 (-) True LOC110508613
XM_021589271.2 mRNA upstream 430743 14951713 ~ 14956486 (-) False LOC110508618
TU2408125 other downstream 3016733 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 3622725 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 3808306 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 4310129 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4401408 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 1018798 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 1082715 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 1182366 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 2278420 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 2735238 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile