RNA id: TCONS_00006064


Basic Information

Item Value
RNA id TCONS_00006064
length 4522
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_002823
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28197916 ~ 28291989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGCTGAAACCAGTTCTTACAGGAACCGCCGGTGATAAATGTGAGAGTTCTgagaaatcattcatttcttCCTTCAGCCTGGCTGAGGGACATTACAGGGGAGTGTGAGTGTGGATGGCTCCCCGTGTGAGCATGCCTTCAGGAcaagctttttttcttcttcttttgtatGCGTCTCtcttatgtatgttttttttccctccatcATTTTTAAGTGCTTAGGATATGTAGTTCCCAGAACAAGccatactttttcttttttttgagttTCTGTCTTTTGGGATAACTCTGAAACAGAACtctacctctctctctctgtctctgcgaGCGGGAAGAGTGAGATAGAGGAGAGGCAGGGTAAAGGAAACTCGCTGACCTTTCGAGTCGGTAAGTGAAATTTATGTGacctctccctctctttctttcctttctttctttccttctcctCTCCTGTACCgtcccctcctcctcctcttctcctTTTCTGTCACAGAGCTCTTCCCCTGTTTGGCGCCTCTCTTACAGAAGCCTTTCAGGGAGTACCTTGAGGCCCAGATGGCAAAATTTCAACACGCGCAGAAGAGGGCCACCCCAATGGTAAGTCCCATCACTCAAACACAATCTCCTTCACTCAAGCTTCAAATTTGTCTCATTCCCaggcttttgtttttgtatatttatccTCCCTTTTAATTTATTACGCGCAACCCTGTTTCATTTTTGTTCTACATCTTAATTAGTTCCCTCCCCTAATTATCGGTTTTATTCTACTGTGTGGTTCTGGTGTTATTGTTTGCATGTGGCAGAGCATAGAGTGTCAGGGGCTCTGTTCGGGGTCTGGCTGAGGAGGGATGCTGAGTCATACTCCGGAGCTCTTTGAGTGAACCGGACACTCCCCCGCGTCACACTGACTCCCCCCTCTCGGCAGCCGAACCCTGTTGAACCCAGCGCAGGCTGCCGGAGACGGGAGGGGCCCCTGGGAGTTATAGAAGGAGGAGGTTGGGGGGGGGATGTTAGGAAGGGAAACGGAATGAGATGAGGGGGGGGTTGAGTGAGGCTGTACTCTCAATTCCTCCTGCTGCCGCTGATCCCTCACAAGTGCGCACGGAAACAAAGAGCAACACCTTTTCTATATTACACCTTGGTCTGCCTGTTTTAAAGCACTTCTCCATGCGTGCGTGTGTTGGTACGTGTGGGAGGAggaaatgaaagagagagagggatgaAGTTGCACAATGAGAGATTACGGATGTTTCTGGAACAATGTTCCTTTTTTTCTGGTAACTTGAACCTCCTGCAGTTACTTAAGGAAAGCTACGGGTTTGTTCACCCGGCAGGAGGAAGCGATGCCACCATGCTCGCGTGTCACACTTTTAAAGTAACAGAGGAAATGCAGATTTCTGAAGACGACGATCTGGATTGTTTGCTTCATGCATCTTGAAATTTAGTCGAATCTCTTGAGAATTTCTTGAGTAGCGCAGCTATCGgttaacatttttattactttttaatgtgCTTGCTTAGCTGGTGGTTTGCGCTGAGATACTCATGTTCTCAGCTCTGTGTCTTGCACAGGTTATCTGATCCCGTTGGTAGGGGTGTTAAGGTGCACCGTGGCTTATGTTGTGTGTGTGGTCTGTTACACTTAAGGGactgttttaatttagtttaatttagcatCGTTTTAGCTTCTGACCTCTTTGGATTGAATCAAAGTGTAACAGGAAGTAATTCGACTGACTCTGAAGTCACTAAAATGTGCTGTTCGTATTGACTAGAGCCTGTATAGCATTACTCTTTTTTTCTGAGCAAAGATCTTCTCATGTTCTAAAAGCCTCGTGAATCATAATGTTCCTTTCGTCTatagttattgttttgtttccaGAGATCCAAAGAGGAGAGGGAGaaggagtgtgtgtgcgtgtgtgtgtgtgtgtgtaaccacaTGACTCACTACAGGGCCACTCCACCAGATGCAATAACGCATTCAATCAGATTAAGAGGCGCGTGTGTGTTCAGGCACATATGTGCGTGGGCGACTGCCACGTTTTGCGTGTCGCTGCTTATCGCTCGTATTCTATACATCTGAAGAGCATCCGGTCAAACCAGAGGATGCTGGAAGAGCTGGATTTGAATAATGGATTGTCTGCCGGTTTGAAAGGTGAGTATCTACTCTTGTTGAACAGTTTCACACTATGTAGTTAACATGCCTTTTTGTTTTAGTTACTAGTGCAGTGTTGGTCCCCAAAACTGCACATTTTGGATGTCCCCCTAATCTAGCACACCTGATTCAACGCATCAGTTCAGTATTAGAGGCTACATTGGGTGTGTCGATGTAAAATGTGCAGTGTTGGGGCCACCGGGAACAGATTGACAATCACTGCACTGGTGGCATGAGATCAGGCAGCTAAGCAAACGTCTCGTCCATCTCTTCTTCTTgcgtctttttttcttttaattgcttgtgaaatgtttttttttcggtGTCTTTTTGTAGCGTTGCCCTGGTATGTGAGTCTGGAAGCTGCAGGCGTATAAAAAAAGGGAACAGTGTGGAGTTTCTTTTGCCGTTACCTTAAATGAACCCTCGGTTGAACTCAATGCACTGTGCGCTGCTGGCGTAGAGGATGATGCAGGGTTGCCAGATCTTGCGAGTGAAGTATGCGAACTGAAATGTTTGGTCAGCCTGACTAATTTGGATAATAGAAATTAAGAAATTGGTTAAACTGACTGCATCAATGAACAAAATTGCGTAGTATAATAAAattgtgataattatattgtaagaTATAGGcctacttaaaaataaatagttcaaaTTGAGTTTATATGAGATTTTGCACTTTTAACTTCACCAATTTTAATACAAAACTAATGTAACTAACAAAGCAAAAACTAAAGAACAAGAATTCATTCATGAATTAGGCTATATTGTTGAAAATACCATTTTAGATTCAAACAAATCTAAATATCTTCACATAACATAACACAATATAGCCTAGGCCTATCAATTACTACTTTATTTCCAAAACGCAACACGTTTTCCTAACCAATTTCCTTATTTTAGTTATATCAATTACACAATGTAATTATTCGTTAGCTCATTTTGCTAAATTATTACCATGTTATGATTATTCATTCGTTGTTTAATACAAGCTATGTTTCTACATATGCTGTATTTTCCTTCATATCATGTGCTAAGGGAACACGAACACTCTACATAACTTGACAAACCACTAAAACACGCATCTGTTTtctggaaatgaaaccgaaaggcGCAAGTTCATTTCCTCTATTTATAAACGTCTCGCTTATGAACGGTGTATTATTAGCGGATGTGGCAACCCTGCCGAGAGAGAGGGAGCGAGCTAAGGGGAGCGCGCGAGAGAGGCTGTGTCTTAAATCCAGCGAGACAGTCTCTCGGAGCGCTCGAATCCGATGCTGATGCTTAGAAAAACGCTGTCTATGTAGGCACCTCGCTAGGATTGAAAACGCGGCCACTATGAGAAAGAAAGGAGAAGCTGCCTTCGATTATCTCACACGGAGTCCGTTGAATGAAGGGGAAGAAAAAGGCTTTCGGTTCTTCCATAACGGGATTTAAATCATTACATTGTTAGATTTCGATGGCCACGCCCCGCTTTCAGCCCCACCCTCTCCTCTCATCAGTGGTAAGTGAGTGAAATCTTCATTATGTGTCTTTATTGGCGTGGATATAAGTCTTTCCCAGTGTGTCAGATAGCTTATCAGACTGGTGTTGGCTGTTACATTCGCCCGGCGACAACAGTCTGTAGGCTGTCTGACATTTTGGGCATTTTCTTCTCCGATTAAAAATATGAACCCATCtaatttttgaattatttttattattatatatttattacaggtGTCTTGTCTCTGTATTGTTGTCTTATTTTAGCGTCGCCACTATGAAAGATattttttctctgtgtgtgtttacgtGATTGACGTGTTTCTGCTCGTTCGTCTTTACGTAGCCTTTCTAGTTAaagggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgcgtgtgtgtgcctTCGCTCAGCACTTGGTTTTGTCCACTTGAATTTCTCGAGAATCCAGAAAGAACACACCTTATTGCAACACACTGTTATGACAGATCTTTTTGCCCACCCCTTCATTTGCACTTGTCCTTTTTTTCTCCTTCTTCTCCTTTCTATCATGTAACTCCCTGGTCGTTATCTAACATGTGCAACTGgtatttgttattaaattaaaaagatgtTCATTCAGCAATTCCCTCCCTCTGTTTTTCTCCATTGTAAAAACCACAGGGTGACCCGCTTGGCTTTCACAATCGAGTCGTATCATTTCCTCTTTAACTGTTCAGAACATCCTGTACTTTAGGGAAGCCCCTCTGCTATTCGTGTATGTCTGGATATGTCCTGTGTAAATCAATAAAgttgaattaattaaaatGGCAAAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006063 lncRNA downstream 1035771 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA downstream 1035771 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00006061 lncRNA downstream 1195302 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00006060 lncRNA downstream 1195302 27000562 ~ 27002614 (-) True XLOC_002813
TCONS_00005211 lncRNA downstream 1195512 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00005766 lncRNA upstream 30721 28233542 ~ 28239169 (-) False XLOC_002823
TCONS_00005767 lncRNA upstream 36230 28239051 ~ 28256106 (-) False XLOC_002823
TCONS_00006070 lncRNA upstream 44014 28246835 ~ 28248743 (-) True XLOC_002824
TCONS_00005768 lncRNA upstream 58748 28261569 ~ 28276887 (-) False XLOC_002823
TCONS_00005769 lncRNA upstream 73862 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00005236 mRNA downstream 4274 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 79881 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 79881 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005235 mRNA downstream 80176 28030042 ~ 28117740 (-) True XLOC_002821
TCONS_00005230 mRNA downstream 168917 27977373 ~ 28028999 (-) False XLOC_002820
TCONS_00005239 mRNA upstream 108210 28311031 ~ 28368913 (-) False XLOC_002826
TCONS_00005240 mRNA upstream 109392 28312213 ~ 28368695 (-) False XLOC_002826
TCONS_00005243 mRNA upstream 167995 28370816 ~ 28380928 (-) False XLOC_002827
TCONS_00005247 mRNA upstream 167997 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005246 mRNA upstream 167997 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005228 other downstream 783554 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1027844 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1188792 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005203 other downstream 1453785 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 1995393 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005238 other upstream 90022 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005248 other upstream 168388 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 239919 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 245085 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 251679 28454500 ~ 28455171 (-) True XLOC_002833

Expression Profile

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