RNA id: XM_021589265.2


Basic Information

Item Value
RNA id XM_021589265.2
length 3023
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110508612
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14629535 ~ 14652591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagtaggtggcggcatgcacaacGAAATGTGCGAACGGAATGATAGCAAAGAAGAACATCAAGGAAGCTGCTAGTGTGGGCGGCTCTATCAGATGTTCAACATCAAAACAACATTATTAGCGCGTCAGATGCATTTACGACTGCACTGACATTTAAACAATTTTGGTTAGATGTATACTGTATTGGAAGTGCTACTAAAAGTAACCTGATGTATAGCTTATACTGTTTACCGTCTTTCGCTCAATAGCTATCTCAAAATCGCCATTTTACCTTCTGGTTGTGCCTTGGGCGGTGGGTTGAGCGGCCAGTGTCAAAATAGTTGCTAGCTGGGTTGCTCACTATTTTAGACGTTAACCCAGTACAACGAGCTTTTAAAATATCATGCTAGCTGTCTAACAAGCTTGGCTACATGCTTGGTAGCTCATGGTAGTAGTTTCAAATTACGACGTTAGCCAGGTAGCTAGTTAGCCAAGCGACTATCTAGTTGGCTAACAACAAGCCTTATCAGATAATCAACTGTAGCTTGTGGTACTGGCTAGCTACCTAGAGGACTTTATACAATAACCAAACTGGATAAAACGTTGGATTTGGTCGGTTTTAAGTCGGGCTCAGCGGGTTCGCTGACCCCAcagaagaggatgaagaagaggaaggaaCTCGATGCATTAATCGGACTTGGGGACAGTAAAAGGAAGAAAACCAAAAAGGGGTCCGGGCACAGGCTCCTCAGAACCGAGCCTCCACTAGACTCAGAATCCGAATCAAGTTCAGATGATGATGAATTCAGCAACTTTGCTACTGTCGCTGCTTTTGGAAAAAGTTACGTGAAGTGCTGCAATGTCTGCTATCCCTTGTTCCTGTTCATCATACTGGCTGCCTGTGTTACGGCTTGTGCCGGACTGATATGGATGCAGATTGCCCTGAAAGAAGATCTAGACTCCCTCAAAGAAAAGCTGCATACAATGGAATCCGGCCAGAAGGTTTCGTCACATGAAATACCAAAACTAAGTGAAGATCTGAAGACAAAGCAGAGAAAACTGGAGGACATTGAAAATGGAGACAAGGGTCTGAACAAACTGTGGTCCAACCTTACAGAGATTAACAGAAAGATCAGTTTTCTGGACACTGCGGTGAACCATCTAAAGGCCAACATCAAATCAGCCTCAGACTTAATCAACCTTCCGACTACAGTTGAAGAGCTCCAAAAGAGTGTGGCTTCAATCGGCAGCACTTTAACCAGTGTGCAGCATGATGTCAAGACAATACAGACGGCCCTTGAGGACCAGAAGAAAGAAACAGACGACCTCAAGAGGACCATGGATGCCGAGGCTAAAGAATCAAATGTGAAATCGACAGCCTCAGTTGAAAAAGAAACAAGCAACCGCTCATCAACATTAGCTCAAAACCAGGATGTAACTCACCTGAGAGAGGTTGTGAGCGAAGTTAACAAGACCCAAGGGCTGTACCACTCCTGGACTGGTGACCAAATCCAGAATCTCCAAACCGCTGTGTCCAACCTCACTCACAGGGTGTCTTCCATGGAGCAGGGCTCTCCTCAGACAACACCACACAGTGACCTTGTGGAGGTAGTTGAACAATTGCCTGTCAGTGGAGATGCAACAGAACCAGTGAAGGACCTGGCCACAGAGATGGACACCAATGCAGATGGACTTAAAGCAGCAACTTCAGAAGCTACACATGAAAAATCCACAGGTTCAAAGCCAACGAGGCGTCCATGGTTTTTGACTCCAAACCGCACCaagagagagtctggaacagAAAGCCCAAAGACTGTGTCATTCCCTGGAGTCAGCTCTCTGAAAGATCTCAAAGAGCTCTTTGAGCGCTCGGGTACCGACCCCACCACTCAGGGGATGTCTTACCAAGTCCTGAAGAAATTATTTGACACAGCAACGCCAGATCCCCAAAGCCTGGAACGCTACGACAAAGACGGGGACCAGAGGTTCTCACTGGCTGAAATGAAAGCTGCTGCAGGTCTGTGAGAAGAGGAGTGGCAGAGGCAACAGTGGAAGGAGAAGTGGTCTCTGGTGTGTGTGGAGTGCCTCACAGTGAAGATAGTTGCACTTTTATTGAACTGAGTATTTAATAACAAACTGAATGTTGAACGGTAGCACTggctagcccccccccccttccacacCTTACTGGTCCTACACGCCTAAGCTAGAGTAAGCAACTCAGATCCAAGCTTTGATATTTCTATATTATTTTCCAAAACAGTTTACAAAATGGTACTGTTcagaaatatttgttttattcatttatGACCAGTTGATGTCAAATGAATTGTTGAGAAGGGTCAAAATATCACCTATTATAATGTAGttcctaccacacacacactcccattttAGATAAGTTCAGATCGTCTTTGCTCATTTTCTGTCTTCTTTATACATGTTTTGTTGTAAGTCTCGAGTTATTTTCTGCATTCTTATTTGGATTTTAATGTAACACAGAGACTGTAGACATATCCTTAACCCAACCATAGTTTATTTTTAAGTTGTTTTTAAGTCTGCAATATTTGAAGGGCTATAAACACACACTTTTAACTAGTTCAGAATGAATCATGTTGAAATATTAACTCCTGAAGCATATGTAGCAATAATACAATGTAAATGAGCTTATACTAACAGACTATAGTGATCACTTCAATttgcagtatatatacagtaccagtcaaaagtttggacacctactcattcaagggtttttctttatttttactattttatacattgtagagtcATAGTGAAGACACAAACTatgaaacacatatggaatcatgtagtaaccaaaaaagtgttaaacaaatatattttagattcttcaaagtagcaaccttTTGCCTTCGACAGCTTTGCCTTCTCTCcaaccagcttaacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgaacacttgttgactgcttttccttcactctgcgtcccaactcatcccaacccatctcaattgggttgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2411568 lncRNA downstream 17715 14608493 ~ 14611820 (-) True G2108545
TU2411301 lncRNA downstream 103818 14525458 ~ 14525717 (-) True G2108319
TU2411283 lncRNA downstream 113861 14513766 ~ 14515674 (-) True G2108302
TU2411281 lncRNA downstream 114106 14513427 ~ 14515429 (-) False G2108302
TU2411279 lncRNA downstream 114144 14513223 ~ 14515391 (-) False G2108302
TU2411597 lncRNA upstream 27322 14679913 ~ 14680244 (-) True G2108574
TU2411600 lncRNA upstream 31555 14684146 ~ 14696693 (-) True G2108577
TU2411720 lncRNA upstream 197409 14850000 ~ 14850206 (-) True G2108693
TU2411721 lncRNA upstream 198042 14850633 ~ 14850869 (-) True G2108694
TU2411723 lncRNA upstream 199721 14852312 ~ 14852556 (-) True G2108696
XM_021589259.2 mRNA downstream 3634 14615917 ~ 14625901 (-) True LOC110508608
LOC110508166 mRNA downstream 108565 14516805 ~ 14520970 (-) True LOC110508166
XM_036966267.1 mRNA downstream 336986 14259507 ~ 14292549 (-) True dtna
XM_036966279.1 mRNA downstream 343669 14259507 ~ 14285866 (-) False dtna
XR_002471335.2 mRNA upstream 108886 14761477 ~ 14762622 (-) True LOC110508613
XM_021589271.2 mRNA upstream 299122 14951713 ~ 14956486 (-) False LOC110508618
XM_036966366.1 mRNA upstream 299122 14951713 ~ 14956741 (-) False LOC110508618
XM_036966367.1 mRNA upstream 299122 14951713 ~ 14971756 (-) False LOC110508618
XM_036966365.1 mRNA upstream 301077 14953668 ~ 14956499 (-) False LOC110508618
TU2408125 other downstream 3129463 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 3735455 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 3921036 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 4422859 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4514138 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 887177 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 951094 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 1050745 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 2146799 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 2603617 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile