RNA id: XM_021589271.2


Basic Information

Item Value
RNA id XM_021589271.2
length 3543
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110508618
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14951713 ~ 14971756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGTATAATTGATTGTTTTCCTCCTCATTATCAATAATATACTTATTTGTCATTGAaaatattattataataccgaATACAGCATTCATTAACGTTGCATTAATTAACACGGTGTGcaaaatatgttgtttttttccATCTCGATCTCGGACCATGTTTATTAAGACCGGTTTCCATCGGAGGTAAATAAAGAACGAACCAAGCTACTTCctgttttgatattttttttggAGGGGCCGTTTCGTTTCGCTATCGTAGCTAGGATAGATACAAGCCAGATAGATATCTGCAATGAAACGCTATCACTTTACTAACATGTAGGCTGTTAAAAAACAAGACTGATACAACTAGCGATACCGACATAACTACCGTTGTGCTTTGGAGGTTCCAACTGTTTTTGTGCTTGTGGGATATGGCACTGAGTTCTGGCGGTTGGGGTAAACCGACTGTACCAGCCCCGTCCCAGTCTGTACATGGCGGGCCCGCGCTGGCTAACTGCAATACAGTTTTGATGTCGGTACGGGTGTCGGTTTGCCATTCGGGTATTCGACCGCTTTGCCTCCCTGGAGCTGGCGATGAGGCTCTCCGTCTTCAACTTAGCATGGACCCCAGCAAAGCTGGAGAGTTTCGGCTAGCACTGAGGGACATTAGCGGAAGCGGCCGTAGTGTGTTCATTGCTGAGTTTGACCTGCGCTCTGTGCAGTATGAGGTCAAGTCCCCATGCCTTCACGAGATGCGCTTGGCCACGCCCCCCCATGACTGTATCCGCTTCAACTTCCGCTGTGACCTGGAGGCTGAGCAGTGGGCCACTGTGGTGATGTCATCACTAAGAGAGGCACACAGAGTTGCTGTAAATAGTTCCCCACATCCTATGGATGACCGACAGCAGCACGAAGCAGCAGCTCTAGAACAGCGCAGCACAGCCTCCTTACCACTCACTGaGGAGCTGTGCTTGGAGCTTGCCCGGGCGATCGAGGCAGGTGACAGCCAGGGTGCTGCTCAGCACGCGTCTGCTCTAGCTCGTCAGAAGGCAGTGCTCACTATCCAACTGTCTGAGAAGAGTTACGCCGAAGGAGAGATAAGTTTGTCTGTGGCAGTGGAAGACATCTCCTCTTCCTGTTGCGTCACAGTGAAAGTATTTCCCCACATGACTGTCGCAGCACTCAAGCAGCAGGTGTTTTTGGAGTATGGCTTTCACCCTCGCGTGCAGCGCTGGGTGATTGGACAATGCCTGTGCACAGAGCCTAGGTCCCTGGCCTCGTATGGGGTCCAGAGGGATGGGGATACGGCCTACCTTTACTTGGTCTCAGCCCGCCATGCCCGCCTCACCCGCCAGCTATTCCAGCAGGACCAGGAGGGTGCCCACCTCACCCCACCTCCGCCTACCAGCAACGGGCCTCTTTCCCAGGACTGGAGGGGCTACAGCACCCTGCCCTCCAGGCTTAGCCACAACACCCAGGGGAGCACCGGAAGTGGGGCCGAGAGGTTGGGTACGAGCGAGATCCGAGACGCCCTCAACCTGGAGACGCTGCATCTTAAAGATAAACCTGATAAGCCCATCAAAGCCAGTAAAACACAGACCGAATGGGCGTGTCCCTCCTGCACCTTCATCAACAAGCCTACCCGACCAGGCTGTGAGATCTGCAGTACAGCCAGACCTGACTCACGCAAGCACAGCCGCATACAACAGGAgaaaggaagaagagaggagcagaTCAGTGCATTGAGCAGTTAACTGCCTCAACCGTAACCTATACAATAACCTGGAAGACTGATCACTCACACACCAACTTAGAGCTAcaaacccaccaccactactgacatacTATGATGACAAACCTCTGGACGCTGCAGCACAGACATGGAACTCCACTTGCTGAGGCTCACAAAAGGAACTACCTGTATAGTCAATGAGCTGGCTTTTGACTCTGTGGACATGAGTCAGCATCCTTTGCCTTGTGGCAGACTttaccatttatttattttacataagggatggggggggggggggggactagtcCAATATTTATTTTAGAGGGGTGGGTGGTGCTTCTCTCATCCCTCTACCTGATATATCTCAGATGagataatattatatatatttgaaGTTGGCCAACTGTGAAAGTTTATACTTTGAAAGCTGAAAAAAGCTGTTTTtaaaaccagggcctgtattcaaacagtctcagagtaggagtgctggctgtcccaacccccccaaaaaatattggtTGACCGAAAGTAGTCTGTTCTTTTAACCAATCGAttggtaaaaaaagaaaaaaaatccatatatagacacaccctatgtgttttaataaaatcaaataTTTTCACTGAGCTTGTCTGCTGCTTTTAATGGCGCTGACAGGTAGCCTTGGTCGACTTCTATGCGTAATCAGGTGCATGTCTTTACTCAACATTGAGTGCTCCAAACAAAAAGACTGAGTAAATTGACAACTaaaaaatggaatgaaataaaccaaaacttgtttctcacaagtgtagcataggttgtgcgCTCTGCAAACAGTGTCCACTTTGACAATGAGAACAGTAAAAGACTAATAATAATGAATGCATTCACAGAAACTACCATAAATAAATTaacggtaaatgtactactggtgatacgGGTGTGCCATCCTCGCGGCCTCCAATGGATCTGTACATTGAGACAGGCGCGAATCAGACAGGTCTTGTTTGccataaaaaatacatttgactgcTCGACTAAAATCTTGGTCgcccaaacaatcgaccagttgaCTAAATGGGGTGAGCCTGATTAGGGTGAGCCCTAATCAGATTAGATCATAATTAAATCAAcatgggggacctgatcctagatcagcactcctactctgagacaatgAGGGGATTTGATTAATGCCCCCGGTGAACCAGGTAAGAGTTGATTGCGTTCGTGTTGGAACCAAGCGTGAGCCAGGTGCCCTGCTTTTGACAGTGAAGTCAGCTCAAAGCAACCATGATGTAGGTTAAGCAGGTGGGTTAATGAGTAGGCttctgtgttttcacatgcaaacATGATTGCGTGGATAAAAAACACTGACAATGAAAACGAGTTAAATTCAAACTGGTATTTTATGTAAAAGATGTTTCTGAACGATGCATCAGgatgccttgttgacaacatgaccgaGCGGCGCAGATTGCTGTTTGATTTGAGATTGGCGCTTCTCTCTCACCGCTTTTGCCTGTTCATGGTTCAGCTTAATCAGGCACCCTcagtgtgaatacaggcccaggtcTTGTCTGTCATTGGTTGGTGCCATATTGTTTTATAGGAGAGGAATTGCTTGCTAGGAGGCTGTGGAAGTGACAGGGTTTTAAAGTGCTTTTATTTTTATAAcattgtatttagtgtttaacaGAATGTTTGGCAATGTTAATGTTGATGTGTAATGCGTTTCACCTACTTTCCAATAAGTTTCTGTCCGGACTGTGATAGTGAATGTTTTGTTTTGTCAGAAACATGACTGTATAAAATGGTGTTAACTGAATAAACGTAAGTTAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2411973 lncRNA downstream 1527 14949838 ~ 14950186 (-) True G2108928
TU2411970 lncRNA downstream 4198 14947210 ~ 14947515 (-) True G2108925
TU2411969 lncRNA downstream 4566 14946937 ~ 14947147 (-) True G2108924
TU2411966 lncRNA downstream 6453 14943706 ~ 14945260 (-) False G2108922
TU2411967 lncRNA downstream 6453 14943706 ~ 14945260 (-) True G2108922
TU2412022 lncRNA upstream 62284 15018770 ~ 15019436 (-) True G2108970
TU2412218 lncRNA upstream 313501 15269987 ~ 15270189 (-) True G2109156
TU2412225 lncRNA upstream 316841 15273327 ~ 15273686 (-) True G2109163
TU2412255 lncRNA upstream 340760 15297246 ~ 15297563 (-) True G2109193
TU2412277 lncRNA upstream 350771 15307257 ~ 15307480 (-) True G2109212
XR_002471335.2 mRNA downstream 189091 14761477 ~ 14762622 (-) True LOC110508613
XM_021589265.2 mRNA downstream 299122 14629535 ~ 14652591 (-) True LOC110508612
XM_021589264.2 mRNA downstream 299126 14629535 ~ 14652587 (-) False LOC110508612
XM_021589259.2 mRNA downstream 325812 14615917 ~ 14625901 (-) True LOC110508608
LOC110508166 mRNA downstream 430743 14516805 ~ 14520970 (-) True LOC110508166
XM_021589274.2 mRNA upstream 357217 15313703 ~ 15315936 (-) True LOC110508622
XM_021589275.2 mRNA upstream 375781 15332267 ~ 15335367 (-) True LOC110508623
XM_021589276.2 mRNA upstream 382799 15339285 ~ 15341799 (-) True LOC110508624
XM_021588585.2 mRNA upstream 529587 15486073 ~ 15499269 (-) False irf-10
NM_001310139.1 mRNA upstream 531286 15487772 ~ 15496663 (-) False irf-10
TU2408125 other downstream 3451641 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 4057633 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 4243214 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 4745037 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4836316 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 583282 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 647199 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 746850 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 1842904 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 2299722 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile