RNA id: TCONS_00058076


Basic Information

Item Value
RNA id TCONS_00058076
length 2776
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_028555
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10766014 ~ 10835620 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACAGTAACAGAGAGCAGCATGTAAACAAAGCTGTTCAACAAACAGGAGAGCTCTGCTTAAACATATCACTAAAGACACTTCAATAAGTGCTAAACATGAACTTAACTGCGACTGAAGTACAAAGAATAAAGACTTAATGAGGAAATGCAGGAGAAATACTGTACAGTTACTTACAGATGAGTCGCTTTTCACTGCATTCCTGTCCTTTATCTCAGCGTGTGTCGGTTATTTTAGTTGTCGGACTGCATTAAATGTTGTTTAGTGACATTAAAACACTGTCGCTGAGCTGTCATCTTCAGTTTATGTGTTTAAAACTGCACACTCGTGCTGCTGCTGCACCAAAACAAACGTCACACTGTCAACATCCTGAAGCTCTGGGTCAGACTGAACGGGAAGTCGCGCGCGCCGCCTGGTGGAGCGGATGGAGAACTGCACTAGAGTCGCTAACAGGACGAGTTACAGCGTTAAAGCCTCGTTTATTTAAAGTCTGATAAGTCATTTACACTCCAAATATgcataatttaaaatgtagacATCCAGAAACTATAATGCATCTATTAGGTAGGTTATTAAATAGCTCAATGTCAAGTGCCAAATAAGTCAAGATGTGGTCGTCAGCGCCCTCGTGTGGGCATGAATCAGTGTTGTTCAGATCATGAGCTCGTGGTGTTCAGTCGCAGCGCCGCCTGCTGGACAGTAAGTGTGTCTGCATTAATATCAAACACTAatGACTTCTGTTGGAATGGATCTACACTGATGTCTGTTTTAGACTCCAGTCCTGGGGACCAACAGAGCTCCACATTTTACATGTTTCTCTTATCAAATACACACAGGTTCCTGAAAACAGGTTGTGAATCAGGGTCCGTATTCACAAAACTTATCTTCTCCTCAACATCGGAAAAAGTTTTAAGCTAAGAGTTTTCTTTTACAACTTATTCACAAAGCTGCAGATTCAAAGGTTTACTGGAGAGAAGTCTTGAGCTAAGATTGAGGCCGGGGTTCAGCCCATTGCTATGGATGATGTCAGCATGCTTGTTAATTATGCACACAGTGATTGGACGATAAGCAGGGGAGGAGTCTCtgtcagaaatgtgttgataGAAACTTTGCAGAGGACAATATCATGTGGCTGTATTcaaataaaggttttaaaatgCCGGGTAAGTGAAGAATTGAATTCCTTACTCTtaatatgacagtaaataaataaagacttctaatgttttaatttacggtattttatttataaaataattaggcaaatatgttttaaattactttatgtattttctttttacataTACACTGAACAATATATAAAAAGGCCACATTTGTATTtatagtatttgtatttatttttgaaaatatatatatttttgtcagggtttttttttatttttgaatgtgtaataaataaattgtataaattgttttataaaattataaattgaaataaattaaagtatttatatttgaaggcatatttattttcttatgtgAATACCTCTTGATTAAAGGTGACAACTTGTTCAAAGCTATTTGTGGTGAAATGTTTCTgtctaaaatgttttcttttcaagCCAGACGGCTGAAAACAGCCATTTTAGGATAGTCTGTCATTTGTTCTGAGTGACTTCACTACTCTTTACATTTCACTGATTTTTGATCTAGTTTTAATGCTAAAACCCTTTGTGAAATACTCTTAAAGCAAATGTTTAGGATACCTACAATCAGAACTCACACTAAAATATTTTCCTTGTAAATTGGAGCGTTAGCAGCTAGTTTTAGCTTTGAGGTGTTTTGTGAATACGACCCCAGATGTTTTAAATAAGAGACTGAATGTGTAGAGCCCAACAGGGATccataaatataaatttgcaggTGAACTGAATCATGAGGAGAGTATTTTATCTGCAGTCGAAGCAATGTGTTTGTTCATGTCCTCACTGCCCTTTCTTCTTTCTTGTGTGGTTGAACTTAACTAAACTGAAGTTCATTTGTTTAAACATCATCTGCAAAAAACAAGATGTGCTTACCATTTGATGGTGATCCTCAGCTTCAAGTGTGTGATCATGATCTCCTCTAACTCGGGGATACTGCCTTTGTCTGTTGGAAGGTACAACAACATGTACAGATTTTAAATCATTCTTATAATGGTGGCTTATTTGGCTTCTGAATTGTTTATGTTGTAAGTTGCTATATGACAGCTTCATCTTTTATGTGAATCACTTTATACGATGCTTTGAATTGAACTGCAGTGCTCTAAACACctcagttgaattgaattgaatagaatgtAATTAATTGAATTTACTTACAGGCTAAAAATGGGGTAAATGCAAATAAGAACTCAGTCCAGACATGTTGAATGAATCGATTTAGCTGAatcaatttaaatgattcattgaacAGAACGGAACTGTGAACACttcaaatgaattgaattgaattgctcTACATCTGCAGGTCAAAACGGtgtaaatgccaaaaaaaaaaaaaaacagtccaaacATTAATGAATCAATTTAAATGAATCAGTTTAAATGACTCATTGAATTGAACCGCTGTAAATGCTTTAAATGAATCAAACTGGTTAAAAGAAAAGAATCTAAAAGCCTAATAAAGCTGTTTTTTAAGATCACTCtcactatatactgtataagaGCTTGTAACTGACCTGTGTTCAGTCTTGATCACACCGTCTTCACTTCTGTGTTCTTTtcctattaataaaaaaacaaagaaacattaaaaaactgcCTTGTCATACATA

Function

GO:

id name namespace
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058075 lncRNA downstream 13073 10748977 ~ 10752941 (-) False XLOC_028554
TCONS_00058074 lncRNA downstream 13262 10748977 ~ 10752752 (-) False XLOC_028554
TCONS_00058073 lncRNA downstream 13262 10748977 ~ 10752752 (-) False XLOC_028554
TCONS_00058072 lncRNA downstream 13292 10748977 ~ 10752722 (-) False XLOC_028554
TCONS_00058071 lncRNA downstream 13292 10748977 ~ 10752722 (-) False XLOC_028554
TCONS_00055391 lncRNA upstream 2370 10771874 ~ 10785654 (-) True XLOC_028556
TCONS_00055392 lncRNA upstream 4076 10773580 ~ 10775324 (-) False XLOC_028555
TCONS_00058095 lncRNA upstream 4076 10773580 ~ 10812150 (-) False XLOC_028555
TCONS_00058096 lncRNA upstream 5108 10774612 ~ 10789244 (-) False XLOC_028555
TCONS_00058097 lncRNA upstream 5108 10774612 ~ 10793022 (-) False XLOC_028555
TCONS_00055388 mRNA downstream 166952 10574822 ~ 10599062 (-) True XLOC_028552
TCONS_00055386 mRNA downstream 856643 9901116 ~ 9909371 (-) False XLOC_028550
TCONS_00055385 mRNA downstream 874140 9880647 ~ 9891874 (-) True XLOC_028549
TCONS_00055383 mRNA downstream 898229 9854075 ~ 9867785 (-) False XLOC_028548
TCONS_00055398 mRNA upstream 41986 10811490 ~ 10826575 (-) False XLOC_028555
TCONS_00055399 mRNA upstream 43757 10813261 ~ 10835620 (-) False XLOC_028555
TCONS_00055400 mRNA upstream 44406 10813910 ~ 10826575 (-) True XLOC_028555
TCONS_00055401 mRNA upstream 156667 10926171 ~ 10931729 (-) True XLOC_028557
TCONS_00055402 mRNA upstream 179885 10949389 ~ 10958074 (-) True XLOC_028558
TCONS_00055389 other downstream 104337 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2178106 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2624548 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 2890084 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 2890254 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 837254 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 838692 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1505610 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1643915 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1826176 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile

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