RNA id: XM_021589275.2


Basic Information

Item Value
RNA id XM_021589275.2
length 1756
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110508623
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 15332267 ~ 15335367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGACCGGGGCCAGATCTGGGAGAGGGTGGGTCTCGAGTTCCTGGCGATTTCTTGGAGGGATTTAGCCGGGATCTAGGGGGCAGTGAGAGATTTAAGAATTGATAGGTGGTCGAGTTTTGTTTGGCCGAGTGGATATGCGCAAGAAAGTCGAGGAGCTTTATGTTTCCCCTCTTAAAGGATTATTGCCAGCGATGGCCACAGTGAGACGGAGGAGGAGCAGCCGCCACACCGATACTCAGCTGATTAGAACTGCAATAAACGCGCAGTGAATCGCCACTGGACACTAACCTCTCCAATTATCACATTTGGAAACATATTTTAGATCGTCTGAAGGAGTTATGCTTAGCAATTGACTGAAGTATTGGGTGTAGGATACTGCTCTCATTAGATTTTTCAGGTCAGTGCAAAAATAAAAAGAGCATTGGTCATCCTCTTGGTTATAGGCTACTCATACTCCTCTGTGTCCCAATTTGGGCGCAAACATGACGACTGAGAGCTCACAGCAACATCTGGACTCGTCTCATCCTCTGAGATCCAGCCCAGCAGCCGGAGTGATGCACGCCACTCAGATGAGCGCACAGCCAGTGGCGGAGAGCTCACCAAATGCGTCGAACAAAAGGAAAAAGGGCAACTCTGGCTTGAGGCGTCCTGAGAAGCCGCCCTATTCATACATCGCTCTTATTGTGATGGCTATCCAAAGCTCCCCGACAAAGAGGCTTACTCTGGCTGAAATCTATCAGTTTCTTCAGGCCCGTTTCCCTTTCTTTAGAGGGTCTTACCAGGGATGGAAAAACTCTGTGAGGCACAACCTGTCTCTAAACGAGTGCTTCATAAAACTGCCCAAGGGCCTCGGCAGACCAGGCAAGGGACACTACTGGACCATAGACCCGGGAAGCGAGTTTATGTTCGAAGAGGGGTCCTTCCGTCGCAGACCTCGCGGATTCCGTAGGAAATGCCAAGCTCTGAAACCCATGTATCGAATGATGAATGGCATCGGCTTTGGCGCGTCGATACTGCCCCAAAACTTCGATTTCCAGAACCCCTCTGCGTCCTTGGCATGTCATAATGGTTACAACTTGGACGTGATGGGGACCACGGTGCCAGGGAGCTACGACGGGCTGGCTGGAGGGCATCATGTTCCTCACATGTCGCCAAGCCCCGGGTCCACCTACATGGCTGCCTGTCAGGTGTCGTCTAATGGAGAATACTGCCCAGACAACAGTAGTAGCCCTCTGCACTCATCGCCGGCGGCGATGGCAGCAGGCACCTTGGACTGTCACTCTCCCTATACCAGTGTCCCGTCACACTGGACATCACCAGGTGTGTCTCCATACATCAAGCAGCAATCCCTGGCTTCAAACAGTCCCACATCCTCTGCCTTGCATTCGAGCATATCCCCTTACTCTCTGGAGCAAAGCTATCGCCATCACAACGGAAGAGACTCATCTGATATTTCAACGGGATTGTCTCGATACTCGAACCATTCATCGCCAGTATGTGACAGGAAAGATTTTGTTTTGAACTTTAACGGAATCTCTTCATTTCACCCACCAACTGCCAGTGGATCGTACTACCACCAGCTACATCACCATCACCAGAATGTCTATCAGGACGTCAAGCCATGCGTTTTGTGAAATCAACGCGTTAAGACCACCGCCATCTTGGATGAGGATCACAACAACTACACAGCTACTATATACAAGCCATAAGCTTCCTTGTCATTTGTCCCAGATGCCAAGACCTGTAaaaatggg

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2412297 lncRNA downstream 11387 15320678 ~ 15320880 (-) True G2109228
TU2412277 lncRNA downstream 24787 15307257 ~ 15307480 (-) True G2109212
TU2412255 lncRNA downstream 34704 15297246 ~ 15297563 (-) True G2109193
TU2412225 lncRNA downstream 58581 15273327 ~ 15273686 (-) True G2109163
TU2412218 lncRNA downstream 62078 15269987 ~ 15270189 (-) True G2109156
TU2412721 lncRNA upstream 173473 15508840 ~ 15509110 (-) True G2109634
TU2412761 lncRNA upstream 225753 15561120 ~ 15561394 (-) True G2109672
TU2412764 lncRNA upstream 229075 15564442 ~ 15564642 (-) True G2109675
TU2412773 lncRNA upstream 241258 15576625 ~ 15576840 (-) True G2109684
TU2412789 lncRNA upstream 261362 15596729 ~ 15596940 (-) True G2109700
XM_021589274.2 mRNA downstream 16331 15313703 ~ 15315936 (-) True LOC110508622
XM_036966367.1 mRNA downstream 360511 14951713 ~ 14971756 (-) False LOC110508618
XM_036966366.1 mRNA downstream 375526 14951713 ~ 14956741 (-) False LOC110508618
XM_036966365.1 mRNA downstream 375768 14953668 ~ 14956499 (-) False LOC110508618
XM_021589271.2 mRNA downstream 375781 14951713 ~ 14956486 (-) False LOC110508618
XM_021589276.2 mRNA upstream 3918 15339285 ~ 15341799 (-) True LOC110508624
XM_021588585.2 mRNA upstream 150706 15486073 ~ 15499269 (-) False irf-10
NM_001310139.1 mRNA upstream 152405 15487772 ~ 15496663 (-) False irf-10
XM_021588587.2 mRNA upstream 161408 15496775 ~ 15502959 (-) True irf-10
XM_021588606.2 mRNA upstream 216321 15551688 ~ 15555494 (-) True LOC110508170
TU2408125 other downstream 3832195 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 4438187 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 4623768 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 5125591 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 5216870 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 204401 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 268318 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 367969 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 1464023 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 1920841 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile