RNA id: XM_021589322.2


Basic Information

Item Value
RNA id XM_021589322.2
length 6151
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110508645
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17010525 ~ 17154942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgtctgtgtgtgagtgcagGCAGGCTGACAATGATTTCCTCAGTGATTACGTACAGAGCGAGTCCCTGCGGGGTAGGGGCCCCCTCTGGAGCCATCCTGATGGCTTTGGGGGCCTTGCTTCCATTTTCCATTATTATGTGGACTACCGGAGCGACAGCGCAGTCCAAGACCTTGCAGTAGAAGACAATGTGACAGAGGAGCAGCACAGTCCTGGGCAGAGTGCGATTCCGAGCGATCCAGAGTGTTCTCTCGAGAGGGAATTGGAGGATGGTGAGGCTGAGGCCGGGTCTAGGCGTTTGAGGAAGAGGCTTCTCTCTCCAGAGGAAGGCAAGGAGGGGGAGGACGACGACGAGGAGGCCGCGCTGCACAGCTGCGACAGCTGCCGGCAGGTGTTCGAGTCGCTGAGCGATCTCACCGAACACAAGATTAATCAATGCCAGCTGACAGATGGTGTTGATCTCGAGGATGATCCTTCCTGTTCTTGGCCTGCATCATCTCCATCCAGTAAAGACCAGACTTCCCCCGGCCACGGTGAAGACTATGATTTTGGCGAGGATGAAGGGGGCCCCGGCCTGCCGTACCCGTGCCAGTTCTGCGACAAGTCCTTCAGCCGTCTGAGCTTCCTGAAGCGCCACGAGCAGAGCCACGGTGACAAGCTCCCCTTCAGCTGCACCTTCTGCAGCCGCCTGTTCAAGCACAAGCGCAGCCGCGACCGCCACGTCAAGCTGCACACCGGCGACAAAAAGTACCACTGTGGCGAGTGCGACTCGGCCTTCTCACGCAGCGACCACCTCAAGATCCATATGAAGACCCACGCCTCCAACAAGCCCCACAAGTGCCCTGTGTGCCGCCGGGGCTTtctctcctccagctccctccatgGACACATGCAGGTCCACGAGCGGGGCAAAGACGGTGGTGGTGGGGGGCCAGGTAGCGGCCTCTCCAGAGAGGAGTGGAAGCTGAAGGAGACGAGGAAGTGCAGCCGCTGCGAGGAGGGTTTTGATGTCCCTGAGGAGTTGCAAAGGCACATCGCTGAGTGCCACCCAGAGTGCTCTCCATCGGAGGACGGGGGCCTGTGTGGCGCCTTGCAGTGCATCTATTGCCACGAGCCATTCAGCGACGAGGGTGTCCTGCTAACCCACATTGACCAGGCCCACAGCCGCGACCGCAAAGGTCACAACTGCGCTGTCTGCTCTGAGCACTTCCTCTCTGTGGAGGACCTGTACGCCCACATGGATGTCCACCAGCTCCCCGAATCCAGTAACCACAGCAACAGCCCATCCCTGCTCACTGTGGGCTACACCTCtgtctccagcaccaccccagactccaacctctccgtCGACAGCTCCACCATGGTGGAGGTAGCCCCGCCCATACCCAAGACccgggggaggagaaagagggccGCCCAGCACACCTCACACGACATTGGGGGCCGTTCATCCAAGCAGCCCAAGATCTCCTACAGCTGTATCTACTGCAACAAGCAGGTGTTCTCTAGCCTTGCCGTGCTTCAGATACACCTGCGGACCATGCACCTTGACAAACCTGagcaggcacacacctgtcagttCTGCCTAGAGGTGCTTCCCTCCCTGTTCAACCTGAACGAGCACCTGAAGCAGGTGCACAATGCCGAGGACCATGCCACCCTGATGGGCAGCCTGCCTGACACCCTGCTTCAGTGTAATTTCTGCACTGAGGTTTTAAGTGACCTCAACTCTCTTCAAGAACACATCCGCTGTTCCCACGGCTTCCCCAGCCCCGTGGCCAAGGAGAGTAATGCCTTCTTCTGTCCCCAGTGCTTCATGGGATTCCTGACTGAGGCCACCCTGGAGGAGCACGTCCGTCAGACCCACTGTGACGGGGGCAGCCTGCGTTTCGACTCCCCGCTAGAGGTGACTCCCAAGGAGCCCATTGTAGAGGTGTACTCCTGCTCCTACTGCACCAACTCGCCCATCTTCAACAGCGTTCTGAAGCTGAACAAGCACATCAAAGAAAACCACAAGAACATTCCTCTGGCGCTGAACTACATCAACAATGGAAAGAAGTCTCTGCGGACCCTCAGCCCTTCCTCACCCATATCGATTGATCAATCTTTCCTTCATGGTTCCTCCTCTCGCAGCAATCGTGGCACTAGCGAGTTCATCTGCAACCAGTGTGGGGCCAAGTACACCAGCCTGGACTTGTTCCAGACCCACCTGAAGACTCACCTGGATGGGATGCAGCCCCAACTCAACTGCCCCCAGTGCAACAAGGACTTCCCCAACCAGGAGTCCCTGCTGAAGCATGTGACGGTCCACTTTACCATCACCTCCACTTACTACATCTGTGAGAGCTGCGACAAGCAGTTCACCTCGGTAGACGACCTGCAAAAACACCTGCTGGACATGCACACATTTGTGTTCTTCCGCTGCACCCTCTGCCAGGAAGTGTTTGACTCCAAGGTGTCCACCCAGCTCCACCTGGCTGTCAAGCACAGCAATGAGAAGAAGGTGTACCGCTGCACCTCCTGCAACTGGGACTTCAGGCACGAGGCCGACCTGCAGCTGCATGTCAAGCACAGCCACCTGGAGAATCAGGGCCGGGCCCACCGCTGCATCTTCTGTGGGGAGTCCTTCGGCACGGAGGTGGAGCTGCAGTGCCACATCACCACACACAGCAAGAAGTACAACTGCCGCTTCTGCAGCAAGGCCTTCCACGCCATCGTACTTCTGGAAAAGCACCTGAGGGAAAAGCACTGTGTGTTCGAGGGCAAGGCCCAGAACTGTGGTGCGAATGGATCCACCACCGGAGGAGCGGACCACCACCCGGCGGCCAAGGACGACGCAGAGCTACAGGGTCTCCTGTCCAACAGCCATGGTACAGGAGCGGCAGGATCAGGAGGCGTGTTGGAGTCCCCAAACAACCACGATGGGAGTGAGGAGGAAGTGGACACCGCTGACCCCTTGTTTGGGTGTGACATCTGTGGGGCGTCATACACCATGGACTCACTCCTCACCAACCACCAGCTCCGAGACCACAACATCCGCCCGGGCGAGAGCGCCATGGCGAAGAGGAAGTCGGACATGATCAAGGGCACCCACAAGTGTAACGTCTGCCAGCGCACCTTCTTTTCAGAGGCAGGTCTGAGGGAACACATGCAGACCCACCTGGGCCCCGTCAAGCACTACATGTGTCCCATCTGCGGAGAGCGTTTCCCCTCGCTGCTCACATTGACCGAGCACAAGGTCACCCACAGCAAGAGCCTAGACACGGGCAGTTGCCGCATCTGCAAGATGCCCCTGCAGAGCGAGGAGGACTTCATGGAGCACTGCCAGATGCACCCCGACCTGCGGAACTCCCTGACGGGGTTCCGCTGTGTGGTATGCATGCAGACCGTCACCTCCACCCTGGAGCTCAAGATCCACGGCACCTTCCACATGCAGAAGACAGGCACCATGTCCACCAACCACCCCATTGGCCGCACCACCAATCTCGcttcccaccaccacaaccagcatcaccaccaacaacaccaccaggcCAACCAGAAACTCTTCAAGTGTGCCTCGTGCCTGAAGGAGTTCCGCTCCAAATCTGACCTGGTGAAGCTGGACATCAACGGGCTGCCTTACGGGCTGTGTGCCGCATGTGTCAGCGCCGCCGGCTCAAAGAGCTCCAGCCCCACGGTGATGAATGGaggcaggcagcagcagcagggagggggaggagccACGACCCCAGCCATGCCTGTAACAGCATGGACCGCTCAGACGGAGAGACTCAGCCCCAGAGAGGGGAAAGGCAAGCCGCCCCATTCATCGTCATCGCCCTCCTCCTCTATTTCCTCGACCGCCACCAAGACACGGTGCACCAGCTGCAACGTGAAGTTTGAGTCGGAGGCTGAGCTGCAGAACCACGTCCAGACGGTGcacagggagcagggaggggacaGCAACAGCGGGCAGCTCAGGACCCCACAAGTCTCCCCCATGCCCAGGGCCAGCCCCTCACAGACTGAGGAGAAGAAGACCTACCAGTGCATCAAGTGTCAGATGGTCTTCTACAGCGAATGGGACATCCAGGTCCACGTGGCCAATCACATGCTAGAAGAGGGTCTGAACCATGAGTGTAAGCTCTGCAGTCAGTCATTCGACTCGCCAGCCAAACTCCAATGCCACCTGATCGAGCACAGCTTCGAGGGCATGGGCGGCACCTTCAAGTGTCCAGTCTGCTTcacagtattTGTCCAGGCCAGTAAGCTCCAGCAGCACATCTTCTCAGCCCATGGCCAGGAGGATAAGATATACGATTGCTCCCAGTGCCCACAGAAGTTCTTCTTCCAGACAGAGCTACAGAACCACATGTTGACTCAGCACAGCAGTTAACCAGGCAGATTATCAGTGgacctgaggaggagaggagaaccataCGGCGAGGAGGAGAATCATGTCTGACCCGGTCGGTCCTCCAGCCACCTTCAGTGCAATATCCCACTGGCTCTTTTGCGCTGAACTTTGGATTCAGTTCACATCGGGAAGGAACATGTCACACACTAAAAAAGAAGAAAGACGGATGAAAGACAGAGGGGTGAAAAAAGGACAGAAAAACTTAGCTCTGGTCTTTGACTGGTTGTTATTTCAACAAAACTGGCCAACTATCTTTGTAAATAGAAATTGTTCATGTGTTGCTTAATAACTTCAGCTATATTGCAGTCTTATACAGTATTTGCCATTGTACAGTTCTGAACCGTTTGTCCCCAAAAAAAGAActacaaaaaaatgacaatgcCACTGTCAGTCAGAAGAGGTGGAATTCATCAATAATGTGTTGGTGAAACAGGGTGCCAATGTGGGGTATTATTATGTAGGGAACAGGAAGTTGTGGTATGGTCAGTCAGGACCCTTTTCATCAGTGCCCATTTCCTGTATGTGGACACTATCCTGACCTGGTCACTCGTTACTGAAGCGGGTAGCGGGGTGCTTGATCACCAGCCGAACCTGAGATTGTGACATCACGGGTCTCATTCCAACATGGCTGTCCTTCTAGAAGACCAGCTGAGGACTGAATGGTGCATTTAATCTGGTCCTCCTGCCTGCGCAAGTTCGAATGAAAGGAAgagaaaaaaagaaggaaaaacaGGATAGGGTTCTGATATATGCAAAAGCAGTGACACAGATTTGGAAAGGCCAGCTAGCTCCTCTGGTTGGCACGGGAACAGAGGCATTGTGAACCCCCTGTGTCTCCTAGAgcattatggggggggggggggggatctccagCCCACTGATTTAAACCTGTACAATTCTGTTATTAATGTTTACTGCTCGTTCAAGCCTGGAGATTACTGGAATTTTTTTCTTCTCGTTTTTGTTAGCTCTttgtattttagatttttttgcaatgTGGAATACATCCATTTTGATTTGGGGTTGTTGTGGAGACTATACATGTATTACGTCTCTCTGTAGGGATGTGCTTATGAAACCTATGTCCTGGGCTCTCCTGAAGAGTTCCCAACTTATCCCCTTCCTTCCTCGTTTCCTGCGGTATCCCATTGCTCTGCTCTCTGCTCAAGCTGGAAGCCATTGTGGCGTTATTATACACCAATATAAATCAATctgttacagatgtaggatcttaatttgaccagttttaCAGCAGGAAAATcattctgcagcaacaggaaatgtgaattattgtgtggattataattcattacCATTTTTGTAgcagttgatacattttttggttAGGAAAAATCTATTCAAAATCAATtcaaaatcaagtcaaatcaagacaaactttagaagcctttttaaatctCGAGTACATTACAAGATTTCATTTCCTGATATGCAGGACATTTCCTGCAACAACAAGGTGAttaaattaagatcccacatctgtaaATGTTTTTGCATTCATTGAACCTGAGATGCACTTTTGTATGAAACTTTAATGTTTTGACCTTTTGATTGAGAATTGTTCATACTCAGTTTACAGGAAACTAACCACCATCTCCTGCTGCAGCAAAAGGACAGTTCTCTTCTCTGATGTTATTCAAATGTTATTGTACAAATATGGAGTTCTGTATTTGGCAGACCTCATTTTTGTGTTGCACATGTGATAAAATATTAAACATGTATGAGAAAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414151 lncRNA upstream 84838 16923288 ~ 16925687 (+) True G2110998
TU2414155 lncRNA upstream 121258 16887540 ~ 16889267 (+) True G2111002
TU2414115 lncRNA upstream 173939 16835835 ~ 16836586 (+) True G2110968
TU2414084 lncRNA upstream 209044 16801279 ~ 16801481 (+) True G2110940
TU2414082 lncRNA upstream 210457 16799420 ~ 16800068 (+) True G2110938
TU2414315 lncRNA downstream 22476 17177418 ~ 17177657 (+) True G2111155
TU2414368 lncRNA downstream 106857 17261799 ~ 17265127 (+) True G2111203
TU2414400 lncRNA downstream 150454 17305396 ~ 17306544 (+) True G2111232
TU2414625 lncRNA downstream 524780 17679722 ~ 17680022 (+) True G2111444
TU2414624 lncRNA downstream 525603 17680545 ~ 17680793 (+) True G2111443
XM_021589309.2 mRNA upstream 88656 16901891 ~ 16921869 (+) False ss18
XM_021589310.2 mRNA upstream 88656 16901891 ~ 16921869 (+) False ss18
XM_021589311.2 mRNA upstream 88656 16901891 ~ 16921869 (+) False ss18
XM_021589313.2 mRNA upstream 88656 16901891 ~ 16921869 (+) False ss18
XM_021589312.2 mRNA upstream 88656 16901892 ~ 16921869 (+) False ss18
XM_036966630.1 mRNA downstream 41792 17196734 ~ 17236598 (+) False LOC110508175
XM_036966631.1 mRNA downstream 41843 17196785 ~ 17236598 (+) False LOC110508175
XM_036966632.1 mRNA downstream 41843 17196785 ~ 17236598 (+) False LOC110508175
XM_036966629.1 mRNA downstream 41844 17196786 ~ 17236598 (+) False LOC110508175
XM_036966633.1 mRNA downstream 65594 17220536 ~ 17236598 (+) False LOC110508175
TU2414198 other upstream 51673 16953784 ~ 16958852 (+) True G2111044
TU2414093 other upstream 197729 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 562023 16448112 ~ 16448502 (+) True G2110507
TU2413068 other upstream 1061664 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 1071668 15938511 ~ 15938857 (+) True G2109948
TU2414472 other downstream 256202 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 553314 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 599995 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 748256 17903198 ~ 17903924 (+) True G2112127
TU2416413 other downstream 1512173 18667115 ~ 18668496 (+) True G2113059

Expression Profile