RNA id: TCONS_00006065


Basic Information

Item Value
RNA id TCONS_00006065
length 4096
lncRNA type inter_gene
GC content 0.42
exon number 9
gene id XLOC_002823
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28197916 ~ 28291989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTGGTTTAGTTCTGAAGGTTTTGCCCTACTTTGTACCGGAAGTCGATCCCCTCCCTGTTGCAAAAGGCCCTTTTGAGTGTTCAATTGCATAATCGTTCTCTTACTTGATTGTAGAATGTGCGTCAGCAACGCTCCTCTACTACACCCTGTTAAACAACCAGTCGGTCATAAACAAACTACCTGAAAGAGCCACGTTTGTTTACAGAATGAAGCGGCCGGAGtgtgaatatatgtgtgtgtgcaagtagAAGCATGTAGGTTTCGTGTAGGAGAATTGTGTTCTTATTCAGATGCCGATTTGTTGGGACAGGCTGGAAGTTGGACATcagttgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgaagatGTGTTGAAACAAGCTCAGAAATTATCATCAGTATTCCGTTCTCATCTGCTTTAATGTAAAAGTGTCTTCATAACTCATCATCACCAAACCGCTCGACACTGACTGGATCAGGACGGGTCAAGCAGCTGGAGGGCTTTCTACAGTGAACTCAAACTGAACATATACACATAAGCACATGTTCCTGTCTATTCAAAGTGTGCAGGGAGGGGGAACTGTAATAGGGGAGGTCCCTTGTGTTCTTCACATCCCATGCTGCCATGTTATCAGGGACGGGCCCCAGTGATGAAGGCTCTGAGAAGCTTGCAGAGATGTTCCACTTAACAATGATCTCATATCTGACTCACGGATTGCTTCTGGACATTTCTCTGAAACACTTTCTGGAGATTATTTTCACTGCTACAACAAAAACTGGGAAAGACACACACTGAAAAAGTCTTTGTCGTACCTTGGAGCAGATGGTGGCCCTTATTGGAGCTCTTCCCCTGTTTGGCGCCTCTCTTACAGAAGCCTTTCAGGGAGTACCTTGAGGCCCAGATGGCAAAATTTCAACACGCGCAGAAGAGGGCCACCCCAATGATTTCTGAAGACGACGATCTGGATTGTTTGCTTCATGCATCTTGAAATTTAGTCGAATCTCTTGAGAATTTCTTGAGTAGCGCAGCTATCGgttaacatttttattactttttaatgtgCTTGCTTAGCTGGTGGTTTGCGCTGAGATACTCATGTTCTCAGCTCTGTGTCTTGCACAGGTTATCTGATCCCGTTGGTAGGGGTGTTAAGGTGCACCGTGGCTTATGTTGTGTGTGTGGTCTGTTACACTTAAGGGactgttttaatttagtttaatttagcatCGTTTTAGCTTCTGACCTCTTTGGATTGAATCAAAGTGTAACAGGAAGTAATTCGACTGACTCTGAAGTCACTAAAATGTGCTGTTCGTATTGACTAGAGCCTGTATAGCATTACTCTTTTTTTCTGAGCAAAGATCTTCTCATGTTCTAAAAGCCTCGTGAATCATAATGTTCCTTTCGTCTatagttattgttttgtttccaGAGATCCAAAGAGGAGAGGGAGaaggagtgtgtgtgcgtgtgtgtgtgtgtgtgtaaccacaTGACTCACTACAGGGCCACTCCACCAGATGCAATAACGCATTCAATCAGATTAAGAGGCGCGTGTGTGTTCAGGCACATATGTGCGTGGGCGACTGCCACGTTTTGCGTGTCGCTGCTTATCGCTCGTATTCTATACATCTGAAGAGCATCCGGTCAAACCAGAGGATGCTGGAAGAGCTGGATTTGAATAATGGATTGTCTGCCGGTTTGAAAGGTGAGTATCTACTCTTGTTGAACAGTTTCACACTATGTAGTTAACATGCCTTTTTGTTTTAGTTACTAGTGCAGTGTTGGTCCCCAAAACTGCACATTTTGGATGTCCCCCTAATCTAGCACACCTGATTCAACGCATCAGTTCAGTATTAGAGGCTACATTGGGTGTGTCGATGTAAAATGTGCAGTGTTGGGGCCACCGGGAACAGATTGACAATCACTGCACTGGTGGCATGAGATCAGGCAGCTAAGCAAACGTCTCGTCCATCTCTTCTTCTTgcgtctttttttcttttaattgcttgtgaaatgtttttttttcggtGTCTTTTTGTAGCGTTGCCCTGGTATGTGAGTCTGGAAGCTGCAGGCGTATAAAAAAAGGGAACAGTGTGGAGTTTCTTTTGCCGTTACCTTAAATGAACCCTCGGTTGAACTCAATGCACTGTGCGCTGCTGGCGTAGAGGATGATGCAGGGTTGCCAGATCTTGCGAGTGAAGTATGCGAACTGAAATGTTTGGTCAGCCTGACTAATTTGGATAATAGAAATTAAGAAATTGGTTAAACTGACTGCATCAATGAACAAAATTGCGTAGTATAATAAAattgtgataattatattgtaagaTATAGGcctacttaaaaataaatagttcaaaTTGAGTTTATATGAGATTTTGCACTTTTAACTTCACCAATTTTAATACAAAACTAATGTAACTAACAAAGCAAAAACTAAAGAACAAGAATTCATTCATGAATTAGGCTATATTGTTGAAAATACCATTTTAGATTCAAACAAATCTAAATATCTTCACATAACATAACACAATATAGCCTAGGCCTATCAATTACTACTTTATTTCCAAAACGCAACACGTTTTCCTAACCAATTTCCTTATTTTAGTTATATCAATTACACAATGTAATTATTCGTTAGCTCATTTTGCTAAATTATTACCATGTTATGATTATTCATTCGTTGTTTAATACAAGCTATGTTTCTACATATGCTGTATTTTCCTTCATATCATGTGCTAAGGGAACACGAACACTCTACATAACTTGACAAACCACTAAAACACGCATCTGTTTtctggaaatgaaaccgaaaggcGCAAGTTCATTTCCTCTATTTATAAACGTCTCGCTTATGAACGGTGTATTATTAGCGGATGTGGCAACCCTGCCGAGAGAGAGGGAGCGAGCTAAGGGGAGCGCGCGAGAGAGGCTGTGTCTTAAATCCAGCGAGACAGTCTCTCGGAGCGCTCGAATCCGATGCTGATGCTTAGAAAAACGCTGTCTATGTAGGCACCTCGCTAGGATTGAAAACGCGGCCACTATGAGAAAGAAAGGAGAAGCTGCCTTCGATTATCTCACACGGAGTCCGTTGAATGAAGGGGAAGAAAAAGGCTTTCGGTTCTTCCATAACGGGATTTAAATCATTACATTGTTAGATTTCGATGGCCACGCCCCGCTTTCAGCCCCACCCTCTCCTCTCATCAGTGGTAAGTGAGTGAAATCTTCATTATGTGTCTTTATTGGCGTGGATATAAGTCTTTCCCAGTGTGTCAGATAGCTTATCAGACTGGTGTTGGCTGTTACATTCGCCCGGCGACAACAGTCTGTAGGCTGTCTGACATTTTGGGCATTTTCTTCTCCGATTAAAAATATGAACCCATCtaatttttgaattatttttattattatatatttattacaggtGTCTTGTCTCTGTATTGTTGTCTTATTTTAGCGTCGCCACTATGAAAGATattttttctctgtgtgtgtttacgtGATTGACGTGTTTCTGCTCGTTCGTCTTTACGTAGCCTTTCTAGTTAaagggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgcgtgtgtgtgcctTCGCTCAGCACTTGGTTTTGTCCACTTGAATTTCTCGAGAATCCAGAAAGAACACACCTTATTGCAACACACTGTTATGACAGATCTTTTTGCCCACCCCTTCATTTGCACTTGTCCTTTTTTTCTCCTTCTTCTCCTTTCTATCATGTAACTCCCTGGTCGTTATCTAACATGTGCAACTGgtatttgttattaaattaaaaagatgtTCATTCAGCAATTCCCTCCCTCTGTTTTTCTCCATTGTAAAAACCACAGGGTGACCCGCTTGGCTTTCACAATCGAGTCGTATCATTTCCTCTTTAACTGTTCAGAACATCCTGTACTTTAGGGAAGCCCCTCTGCTATTCGTGTATGTCTGGATATGTCCTGTGTAAATCAATAAAgttgaattaattaaaatGGCAAAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006063 lncRNA downstream 1035771 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA downstream 1035771 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00006061 lncRNA downstream 1195302 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00006060 lncRNA downstream 1195302 27000562 ~ 27002614 (-) True XLOC_002813
TCONS_00005211 lncRNA downstream 1195512 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00005769 lncRNA upstream 9557 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00005241 lncRNA upstream 50291 28317417 ~ 28318086 (-) False XLOC_002826
TCONS_00005242 lncRNA upstream 53118 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00006072 lncRNA upstream 114959 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA upstream 114959 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005236 mRNA downstream 4274 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 79881 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 79881 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005235 mRNA downstream 80176 28030042 ~ 28117740 (-) True XLOC_002821
TCONS_00005232 mRNA downstream 170426 28026827 ~ 28027490 (-) True XLOC_002820
TCONS_00005239 mRNA upstream 43905 28311031 ~ 28368913 (-) False XLOC_002826
TCONS_00005240 mRNA upstream 45087 28312213 ~ 28368695 (-) False XLOC_002826
TCONS_00005243 mRNA upstream 103690 28370816 ~ 28380928 (-) False XLOC_002827
TCONS_00005247 mRNA upstream 103692 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005246 mRNA upstream 103692 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005228 other downstream 783554 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1027844 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1188792 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005203 other downstream 1453785 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 1995393 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005238 other upstream 25717 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005248 other upstream 104083 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 175614 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 180780 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 187374 28454500 ~ 28455171 (-) True XLOC_002833

Expression Profile

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