RNA id: XM_021589324.2


Basic Information

Item Value
RNA id XM_021589324.2
length 3983
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110508647
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17263223 ~ 17285064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTGGCGGCAAGAAGACCATCGCATTTCCATTTCCTCTATTATTTGGGAACGCACCCCAACACAGAGCGGAAGACAAGACACAACGCTGAagaaaacaatgtaaaccaatTATATTATTGGAGCTACCTCAAGCACCTTTGATCAAATTAAACTATAATTTATGATAAGACCATGCGATAGTGTCAGTAGTTCGAAGTGGGCGGTGAGCTACTGTAGAAGCCCACTGTAGCGGCAGCGAGACGAGGTGCACCGCCTCTCGACCAGTCTAGACTACCGCTGTCGCTTCCGTTTCTCCGGTGTGTTGTGGTTCGAAAGGCGAAGCGCGCTGCCTCGGAACTTGGTTAACTGTTCTTGAGACTAAACGTACGGGTTGTGATCGATGGCGGACCCAGAACCATCACAACAACAAGAGGAGACGGAACAGATTGACGATGCAGAGTTGGCATTTAAAGGAATAAACATGCTGCTCAACAACGGATTCAAGGAGAGCGATGAACTTTTCAGAAAATACAGgACCCACAGTCCACTGATGAGTTTTGGAGCCAGTTTTGTCAGCTTCCTGACAATTGGATTCTATTGGAGTGAAGAACAGGAAGAGAATGCCATGATGACGTTTGAGGAGGAGAAGATGCAGACAGCCTTTGATGACCTCAGAGCCACGGAGAGACTTTGTGAGCGAGACAATGCCGGGGTCATCGAGACGATCAAAAACAAGATCAGGAGGAGTGACCCCCAGAGGTCAGGGGTGGCTATAGTAGACCGCCTCCAGAGACAGATCCTTGTGGCAGACTGCCAGGTGTACCTCGCTGTCCTCTCCTTCATCAAACAGGAACTGTCAGCATACATCAGAGGAGGCTGGATCCTCCGCAAAGCCTGGAAGATGTACAACAAATGTTACAGCGACATCAGCCAGCTGCAGGATTGCAGCAAGAGGAGGTCCTCCGACCAGCAGgtgtctccctctccatccactgACCAGGCCAACCACGGCGCGACCAAGCTCCCAACCCAGAGGACCAATGGGGTGAGCCCGGAGGCCCTAGCCCGGCTTAAGGGCTCGGTCAGTTTTGGCTATGGCCTGTTCCACCTGTGCATCTCCATGATACCGCCGCACCTGCTGAAGATCGTCAACCTTCTGGGTTTCCCCGGCGACCGTCACCAGGGGCTGTCCGCCCTTGCGTATGCCAGTGAAAGTAAGGACATGAAGGCCCCCTTAGCTACGTTGGCCCTCTTGTGGTACCATACGGTAGTGCAACCCTTCTTTACCCTGGACGGCTCAGACACACAGGCCGGTCTGATGGAGGCGAAGGCTATCCTCCAGAGAAAGGAGCCCGTATACCCTAACTCCTCCCTCTTCATATTCTTCAAGGGCAGGGTGCAGCGTCTGGAGTGCCAGATCAACAGTGCAGTGACGTCCTTCCAAAATGCCTTAGAGCTGGCTACAGACCAGAGGGAGATCCAGCATGTTTGTTTGTATGAAATAGGCTGGTGCAGTATGATGGAGCTGAAGTGCGGTGATGCCTACAAGGCCTTTCAGCGTCTGGCGACCGAGTCACGCTGGTCCCAGTGTTACTACACCTACCTAACTGGAGTGTGCCAGGGAGCGTCAGGAGATCTGGAGGGAGCGGCCGCTGTCTTCAAGGACGTACACAAGCTTTTGAAACGGAACAACAATCAGATAGAACAGTTCTCTATGCAGAGGgcggAGAGGCTCAGCAAACACGCCCCATCCAGAGAGCTGTGTATCCTGGCTGTGATCGAGGTGCTCTACCTGTGGAAGGCCCTGCCTAACTGCTCCACCTCTAAGCTGCAGACCATGAGCCAAGTTCTGCAGGAACTAGATGACATCTCATTTGCTGGCCTGAAAAACCTGCTCCTTGGTGACATACACAGATGTCTCGGCAACATGAACGACTCCATTCAGTGCTTCGATCTGGCTGCCAGAGATGAGATGGGCCATCAAAACAACTCCTATGTGCAGCCCTACTCCATCTACGAGTTAGGCTGCGTCTTACTGGACAGCCCTGAGTCTGAAGCGAAGGGCAGAGCTCTGATGCTCCAGGCCAAGgaGAACTATGCTGGCTATGACTTTGAGAACAGGCTCCATGTGCGCATTCATTCAGCTCTGGCTTCCATGAGAGAGATGACCCCACCCTGACCGCACCCTTTCTCGACCATACATCCACCCTAGCTTGTGTTGGGGGTAGGAGGAGCAGGAAACGGCTCCCTTTAGAGAAGCCATCTTGATCTCCACAGCACTGTGATGGTTCACTGCATTGTGTTTTTCAGTTGACTTGTGTTTTTATAATGAATGTGCCATCAAGTTTGCAATGTATAGTTTACAGTAAGAGTTTCCTGGAGCGATAATGCAGGAATAGTTAAGACTACTGGAGTGTATTAGTGTGTTTTCAACCAGATCAAATATGTACAGTAGTTGCAGCTGGGAGGCAAATGCAACTTTTTACCAGGGAAGTGTCTTTATGGGggaaaatctatttaaattgtACAATCACATCTTTATTCTTTCCCATGTGTTGGGAAAAGGTTCAGATGCAGAACTGGGTATGCCATTGGGTAAGCCACACTCCATTATAAATTAAGCCGTGCCTAGGTTGCTGCCATTATGACCTGAATGTCCAAAGTCCTGTTGCTGTTACAGTAGTAGACCATCTGAATGCACAAATCCTATGCTACTACTCATCACGTGGCCTTGTGGCACTGTAAATTggggagattttttttttattgttttaaagttaatttcctgcaattctacacattttgccatgggttgCAGAGAACATTCTGCagttttaaaggcccagtgcagtcaacatttttattttcctgtgttttatatatatttctacaCTGGGAGGTTGGAATAAGGTTGACTGTAACGTCTCTTCACAATCCtcaagtcaagaacagactatgggaggcgcacagtactacatggagccatggctacatggaactctattccacatcaggtaactgatgcaagcagtagaatccaATAAAAATACACGGTATGGAACAGCGggtactgtgaagagacacacacacacaggcacacatacatATGATAAGGCATGCACTCTAcacacctacagatggatgttgTATTAgatgtgatagtagagtagtagcctgagggaacacacttaatgtgttgtgaaaggATTtattaaatgtaatattttaaattgtatataaaAATGAATGTTGAATGTTTTTGGACCCcagcaaggcagcagctaatggggatccttaatacaAATAATACTGTGAacatgaagatgatgatgatgataatacccttttagtgtaagagctgtttgagtttttggccttccatggttaCCTCACCATGCGGTAAATGAGTTGATAAACCAATAAGAAAGGGTTCCaagtctgccaataacagctcatgGTCagatttcccctccccactcagaccactcccagacagtacTAATGAAATTCTTTCTTGACAAATTGCTCTTTAAGAAGCcatttttaatttaaaacaatcacagtaaggtacttgttacccagaaatgatttgatattgagattaaaAATGGCTGCAATGGATatttttaaagcaagttttctgaaattctacacattttgccatggggcggtgAGAACTTTGCAATTGTAGGAAAAAAAatcagttttacagctaatttcctgcaattctactgaTTTTTGCCGTGGGGTGGAGtgacatttttgcagttttaaagctaatttcctggaattctacacattttgtaatgacttatgccatgttaatataatatctgagtgagaatgactaacaaaatcattgtgtgccccctggaggtcagggcccctgggcatgtgCCTGGCCGCTATTCGGAcaggtttagatagctggctagactaacaaGCAATAATTTAGTGACTGGAAGTGTCTTACATAACGAGAACAATTGCTGATGCACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414949 lncRNA downstream 9786 17233570 ~ 17253437 (-) True G2111742
TU2414903 lncRNA downstream 83683 17179338 ~ 17179540 (-) True G2111700
TU2414858 lncRNA downstream 108309 17153145 ~ 17154914 (-) True G2111655
TU2414773 lncRNA downstream 300027 16958347 ~ 16963196 (-) True G2111573
TU2414765 lncRNA downstream 323966 16939029 ~ 16939257 (-) True G2111565
TU2415032 lncRNA upstream 111977 17397041 ~ 17401108 (-) True LOC110508648
TU2415030 lncRNA upstream 119510 17404574 ~ 17404836 (-) True G2111812
TU2415028 lncRNA upstream 123725 17408789 ~ 17410656 (-) True G2111810
TU2415123 lncRNA upstream 242257 17527321 ~ 17603063 (-) True G2111889
TU2415163 lncRNA upstream 282110 17567174 ~ 17570878 (-) True G2111912
XM_021589323.2 mRNA downstream 2803 17254319 ~ 17260420 (-) False LOC110508646
XM_021589320.2 mRNA downstream 361659 16889532 ~ 16901564 (-) True LOC110508644
XR_002471338.2 mRNA downstream 434946 16819286 ~ 16828277 (-) False LOC110508642
XM_021589299.2 mRNA downstream 1111466 16143163 ~ 16151757 (-) True LOC110508637
XM_021589291.2 mRNA downstream 1208877 16029118 ~ 16054346 (-) True LOC110508634
XM_021589329.2 mRNA upstream 1892 17286956 ~ 17393584 (-) False LOC110508648
XM_021589328.2 mRNA upstream 1892 17286956 ~ 17393585 (-) False LOC110508648
XM_021589330.2 mRNA upstream 1892 17286956 ~ 17393585 (-) False LOC110508648
XM_036966140.1 mRNA upstream 1892 17286956 ~ 17401029 (-) False LOC110508648
XM_021589331.2 mRNA upstream 12790 17297854 ~ 17393576 (-) False LOC110508648
TU2414937 other downstream 5828 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 463354 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 1552294 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 1658760 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 1708326 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 1176110 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 1214477 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 1372489 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 1456854 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 1499833 18784897 ~ 18785322 (-) True G2113320

Expression Profile