RNA id: XM_036966449.1


Basic Information

Item Value
RNA id XM_036966449.1
length 2844
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC100653470
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17565752 ~ 17622150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATGTTGAAACAGCACGCTCAGTCTCGGTGATGTCAATACAGCGGTAGGTAGGCCTAATGCGTCGGTAGTGCAGTATACTTCCTGGTAAATTAACCAATTTCTTTGAAAGAACTTTGACTTGAAACTTATTTTTACACATAAAGACGTATGGCATATGCCACGCAATTTACCCAAACTTGATCTTGCtcgttaaaaataaagaaaatagcaTTAATAGTCTGAAAATGGGGAGCACGGTGATGGAGTCTAACGAGAAGGATAACTCGAAGAAAAAGGGAATCCTACGCATAAATATGCCAgaCCTTAGGGCTTTTACCTCCCCCATACTGGATGCTGAGTCTGGTGGCTCGGAAAAGGATGGCTCTCCTAAGGGAGAGGTCTGCTTTCACTCTGCCAGCCTAACTAAAGGACTCTTTGTGAGGGGTTGTGCTGCTGGTGTCAGCCAACCATCTAGTCCCATGTTTGCCCCTGCCCACTCCCAGTCTCAGACCAGTCCGGGCTCATCTAGAACCATCTTCCCCTACCCCTCCACCCACCAGGACCGCTCACCACCCAAGTCGCCCTGCCGCCTCAACTTCAGCGGTATCTTCCGCTCTTCATCCAACTCATCGTCCAACTCTAGCATCAAGCTCTTCTCTAGGACAAGGAAAGTCTCCGGCCTCTCGTCTTCCCCCACCCCACCCAGCACCCCCACCCAGGCCCCTAGCCAGTCCATGCTGTTCCCCCAGGAGGTTCACCAGAGTGTCCCTGAACGTCTGGGCCGCTCCCTCTCATCACCCCCACCAGACACCGGACAGCGCCTCAGCCTGCCCACCTCTGCCAAGCCCTCTTCCTCTCCGATACCCTACGCCTTTCCACTGCCCCAAGCTACATCACAGCCAAATTTCTACGGTTTATTCGAAGGCATGCTGGAGAAACTTGAACTAGACGATGATGGTGTTGCTGCTGAACCAGACAGTGACATTTACATGCGCTTTATGAAGTCCCATAGCTGCTATGACATCGTCCCCACCAGCTCCAAGCTGGTTGTGTTTGACACTGGACTGCAAGTGAAAAAGGCTTTCTATGCCTTAGTGGCCAATGGGGTGCGAGCTGCTCCACTGTGGGACTCGGAGAGGCAGTGTTTTGTGGGAATGTTGACAATCACCGACTTCATCATCATACTACACAGATACTACAAGTCACCGTTGGTGCAAATATATGAGTTGGAAGATCATAAGCTTGAGACATGGAGAGAAGTATATTTGCAAGAGACATTCAAACCTTTAGTGAACATATCACCCGAATCAAGCATATTTGATGCAGTGTATTCCCTCATCAAAAACAAGATCCACCGTCTGCCTGTCATCGACCCTGTTACGGGAAACCCACTTTACATCCTCACACACAAGAGGATCCTCAAGTTCCTACAGCTCTTTGGGCGCGAGATGCCCAAGCCAGCCTTTATGAAGCAGACCCTGGGGGAGCTGGGCATCGGTACCTACAAGAACATAGCTTTCATCCACCCTGACACACCCATCATCAAGGCCCTGCAGATCTTCGTAGAGAGGAGGGTGTCTGCCCTGCCTGTGGTGGACGTATCTGGGAAAGTGGTGGATATTTACTCCAAATTTGATGTCATAAACCTGGCAGCAGAGAAGACATATAATAACCTGGACCTCACCGTGACCCAGGCTCTGAGGCATCGCTGCCAGTACTTTGAGGGGGTCATGCAGTGCCACAAGCTGGACACACTGGAGACCATCGTGGACAGGATTGTCAAAGCAGAGgtccaTCGGTTGGTGGTGGTGGATGATCGTTCGGCCATCGAGGGCATCGTCTCCCTGTCTGACATTCTGCAGGCCCTGGTGCTCAGCCCAGCAGATGCCTGCAGAGAGGAGGGCCTGCTGGAGTGAGAGGGGAAAAGCTGTGGGGACCACTGAGGTTGAAGGCTGTTATAGAACTTAGTATTCTACTTCTATAGCTTCAGACATGGGGCCCGGAGCCCTTGGTATTGATGCTCTAGACTTTGAAACCAGAAGGATGGGCTGGACTTCACTAGACTGGATTGGACTGATACGGGGATGTAAAGGGCTCTAATGCCCGAGGACCAGCATCTCTCTGTCTAAATGGAACTGGGCTTCATTCACTGTGGGAGGGTTATAGTAGGGTGGAATGATGACGCAGGGTGAGGTTGAGCCAGTCTGGAGACTGTGGCTATGTATATGAGAGCTATGTATATTTAGGGTTCTCTCTCTATCATGCTGCTCTGTCGTTGTTCCCAGCAACAGTGCCTAGTCACTCCCAGTAAGTTTTAAACCTTCAAGGATCAAGAAGATTGACCGATATGGTCAAAGCATCTTAGACTTGATGATACACACTTTTAGGAGAAATGGCAGGTTTTCATGCTTTACCTTGTAATGGTGGGAGGGTCTGTATTTTCATATGAGTAATAtgctgtgaagagagacagaacatAAAAAAAGGCCTTATTTTAAGACGTGTTTTGCCTGCTTTATGTACTTGCAAAGGAAAATGGCCGATTCTGAACTGCTCACTACTGGTCTCCTGTGCAGTGGCCAGAGTAACACAACTCTGGCAAAACTCATCTGTGTTCCATTACTGTAAACAACAACGTTTTGAAGAAAAGTGCCAGAGAaagctttttttttatttaagttTAAACAAATTATGTTAAACTGACTACAGTTTAATATTCTCTTTGTAAATATGTGGCAGTAATATTCAGAGCAAGATGGACTACGTGTGCAAGCGATAAATGACACTATAACAGTTGTAAATGTTGTTCTTTACTTTTCTAAAAGCAGCTAAATAAACAATGACACTGTATTTTTATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2415028 lncRNA downstream 155096 17408789 ~ 17410656 (-) True G2111810
TU2415030 lncRNA downstream 160916 17404574 ~ 17404836 (-) True G2111812
TU2415032 lncRNA downstream 164644 17397041 ~ 17401108 (-) True LOC110508648
TU2414949 lncRNA downstream 312315 17233570 ~ 17253437 (-) True G2111742
TU2414903 lncRNA downstream 386212 17179338 ~ 17179540 (-) True G2111700
TU2415198 lncRNA upstream 2228 17624376 ~ 17624594 (-) True G2111947
TU2415232 lncRNA upstream 61559 17683707 ~ 17683929 (-) True G2111976
TU2415237 lncRNA upstream 75230 17697378 ~ 17697673 (-) True G2111981
TU2415215 lncRNA upstream 89727 17711875 ~ 17712279 (-) True G2111960
TU2415249 lncRNA upstream 103514 17725662 ~ 17725903 (-) True G2111992
XM_036966140.1 mRNA downstream 164723 17286956 ~ 17401029 (-) False LOC110508648
XM_021589328.2 mRNA downstream 172167 17286956 ~ 17393585 (-) False LOC110508648
XM_021589330.2 mRNA downstream 172167 17286956 ~ 17393585 (-) False LOC110508648
XM_021589329.2 mRNA downstream 172168 17286956 ~ 17393584 (-) False LOC110508648
XM_021589331.2 mRNA downstream 172176 17297854 ~ 17393576 (-) False LOC110508648
XM_036966411.1 mRNA upstream 6849 17628997 ~ 17767340 (-) False LOC110508653
XM_036966412.1 mRNA upstream 6849 17628997 ~ 17767340 (-) False LOC110508653
XM_036966413.1 mRNA upstream 6849 17628997 ~ 17767340 (-) False LOC110508653
XM_036966414.1 mRNA upstream 6849 17628997 ~ 17767340 (-) False LOC110508653
XM_036966415.1 mRNA upstream 6849 17628997 ~ 17767340 (-) False LOC110508653
TU2414937 other downstream 308357 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 765883 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 1854823 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 1961289 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2010855 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 839026 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 877393 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 1035405 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 1119770 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 1162749 18784897 ~ 18785322 (-) True G2113320

Expression Profile