RNA id: XM_036966072.1


Basic Information

Item Value
RNA id XM_036966072.1
length 1519
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110508659
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18190804 ~ 18215071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATATTATTAACAAACATAATTTaaatcccctgtctgtctgtcattgtaGAGGATTATCTTCAGTGCAGCGCCAACCTCATCTCTCAGATCCCCAAGATGAGATATGTTTCTCCGGACATAATTTTTGCAGCTCAGGATCTGGTTATCAAATCTCTGGAGGCAACCTGGTTCAAAAAGTACCAAGATACCTTTCCTCCTTGTACCAATGTTACTGACACCAGCACAAGAACCATCGTCCTTACAAACAAACTAAAACATGTGTGGAGCGTCTTCTCCGGGTTCATCAAAAGCATCTGTAAATTCCGACATGCCATGAAGGACAATCTGACCAGAAGCAAGTTTGAGGGCTACCTCAGACACAACTGGCAAGACTTCTCTCTTCGGTACATGCCATCAATGGGGAGCCGGCAAATTGAATCTGTTGACCTGTCCTCGGAGGAGGTAGACTCGTCCCACTTGAAGAGGCGAGTCATCAACCACAAACTGATAACAGTGGAGTTCCTTGTTAACGATCTGTCGTTctacctggagacagagagTTTCAGGAACATGGCAGACTCGGGCACTATGATGGCGTCTGCGGGCATGTATGGGGAGAATGACAATGCTCTGCTACACCAGAAAGCAGAGATGATCATCAAGCTCTTTCTCAAGTCAGAGATCTCTCCCAAACTGAGGGTTAACATAGCAGAAACTGCCAGGGATTCCATCCAGCAGGCCTTTGCCATGGGCAAGGTGGACCGAGGGCTCTTCCATGAAGCCATCATGGTTGTCTTCCCTAACCTCATCTTCTGCTGGAAAAAATTCTGTAGCCAAAAGGTGAAAAAAGGTATAGTCGGAGATAATTCTAAGAAAGAAGACTCCACCGAGCTTCATGACTACCTCCATCCCTTCAACTCTGACTGGTACCGGAAGGTACAAACTACCATGTCCATGATGGACGATTACACCACCCTTAGGTTTACTGTGCATGATGGTCTCAATCTGGTCCTGCCTCAAACCAGACTAGAATTGTGTGCCAGTGTTCTCAGCCCTGCCAAGAGCTCCATGGCTAGGCGGAGATCTGTCTCTACGCCTGCCTCCTCTGAATTTCCACAACTGGAGGTGTCCAACCAACGCAGAAGGTCCATTGGTCCCTTTCTCAGCAGCTGAAGCATCAGCCAGGTGGGTGCTACACTGTCGGTAATGGAGGATCCGCTACCTATGGAGGTGTGGATACCATGGAGGATCTGTAAACGTCGATCAAGGCGATGGGCCCTGATGAAGAGCTCCTGGCTTGTCTGGCAGGCTGTCTTTCTCCCTCGCTGTACTGTATCATTGATGCGCCCTCCGCTAACACCATACTGACTTTTCCAAACTGCCTCAACACTATTAGTTTTCCATCTTTCATTTCTTGTTCATTGAAGAATGATATTTTTTGTTAACAAGAGGACCATAATTTAAATAAATGTCAAAACTTTTTTTACGCTTTCCTAAATGGTTTTTAAACATATTGTATCCACATGTGTAGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2415617 lncRNA downstream 237735 17949564 ~ 17953069 (-) False G2112324
TU2415618 lncRNA downstream 237735 17949564 ~ 17953069 (-) True G2112324
TU2415504 lncRNA downstream 373963 17816606 ~ 17816841 (-) True G2112232
TU2415323 lncRNA downstream 379115 17811102 ~ 17811689 (-) True G2112062
TU2415294 lncRNA downstream 400486 17790031 ~ 17790318 (-) True G2112035
TU2415941 lncRNA upstream 476 18215547 ~ 18217048 (-) False LOC118944819
TU2415943 lncRNA upstream 476 18215547 ~ 18217048 (-) True LOC118944819
TU2415916 lncRNA upstream 10299 18225370 ~ 18228651 (-) False G2112604
TU2415918 lncRNA upstream 10765 18225836 ~ 18228651 (-) True G2112604
TU2415919 lncRNA upstream 16538 18231609 ~ 18231993 (-) True G2112605
XM_021589347.2 mRNA downstream 15232 18102546 ~ 18175572 (-) True LOC110508658
XM_021589348.2 mRNA downstream 15233 18102546 ~ 18175571 (-) False LOC110508658
XM_021589349.2 mRNA downstream 15235 18102546 ~ 18175569 (-) False LOC110508658
XM_021589340.2 mRNA downstream 116650 17987062 ~ 18074154 (-) False LOC110508654
XM_021589341.2 mRNA downstream 116650 17987069 ~ 18074154 (-) True LOC110508654
XM_036966067.1 mRNA upstream 127 18215198 ~ 18222588 (-) False LOC118944819
XM_036966069.1 mRNA upstream 127 18215198 ~ 18222845 (-) False LOC118944819
XM_036966070.1 mRNA upstream 128 18215199 ~ 18222584 (-) False LOC118944819
XM_036966068.1 mRNA upstream 129 18215200 ~ 18222582 (-) False LOC118944819
XM_021589352.2 mRNA upstream 81369 18296440 ~ 18300984 (-) False LOC110508660
TU2414937 other downstream 933409 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 1390935 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 2479875 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 2586341 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2635907 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 246103 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 284470 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 442482 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 526847 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 569826 18784897 ~ 18785322 (-) True G2113320

Expression Profile