RNA id: TU2415941


Basic Information

Item Value
RNA id TU2415941
length 1372
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC118944819
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18215198 ~ 18222845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacataagacagaaggtgaCTTAATGCAAAAACCaaggttgcgtgttcgaatctcatcagaCAATTTTACAATTTTAGGTCATTAGAAATTTTGCAACTACTTTTTAGCCACTTTGCAAcaacttagcatgttagctaacccttgcttaaccatttaacctaaccttaaccctagctagCGTAAGCCACTAAGCTAACTTTAGCCACAGGAAATTGGAATTTGTGACGTATATACAAGTTTAgcgaattcgtaacatattgtacgaattgcaattcgtaaaatatactaattggagtgtccagcatttatgtttactatgttacgcCTTCCCCAAAGTCCAGGTTAGCATAGCCTACCTGCTCAATACTCTTCATTGCCAAcaacagttaacctactgtttttAAACAAGTGTAGCCAACAACAGCTAAATACTCTTCATTGCCAAcaacagttaacctactgtttttAAACAAGTGTAGCCAACAACAGCTAAATACTCTTCATTGCCAAcaacagttaacctactgtttttAAACAAGTGTAGCCAACAACAGCTAAATACTCTTCATTGCCAAcaacagttaacCTACTGTTTTTAAACAAGTGTAGCCAACAACAGCTAAATACTCTTCATTGCCAAcaacagttaacctactgtttttAAACAAGTGTAGCCAACAACAGCCAAATACTCTTCATTGCCAACAAGTTTTCCAGTTATCTTTGTAGCTCCAGTGAAATTATTTTCTTTCAGTTTGTGCATTTATTTTTGTGTTTGTCACGTGGTTGTTGCTGCTTCACTGAGCTCCACTCGTACACATCCTCTCTGCGTACACCCTCATTTGATTCAGAAGCACGCAACACTTTTTCCCAAGGGCTCTGTCATTTTGTCAATTTATTATTTGTTTAATGAGATCTCTCATATTAAAAATGTATACAGGTTAGATTGAAAAGGCCTGTGAATATGATGTGGTGTTATGATAGTCTACTTCTGCACATTTGTGTCGTCTTCAGCTTGTAAATTAGGTTTCAACCAGTTAATTTGTTATGTGCAGCACCCCTGCTTGTTGATGCAATGGTTTTGCACAGGGATTGGGCTCAAGGTATTTCTACCGGGCTTTACCAGTGATCTGTATGCTCTGAAGGGGAGAATATCTGTATGTGGTTAGGCTGCATTTTGTCTTGACAGTGCCCATAGCCTGTACCAACCAAATCCTAATTTAGTAGGCCTATATTGATTTTGTAAGGGGAAAGCATATGACTGTCCAcattgtttgtttttctaggCTAAGTGCTTGTGCATATTTCTGGGGACATTATTATGTAGGTCTACCTCTGCTACCACTTCTACCATTTTGTTAATAAAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2415617 lncRNA downstream 262478 17949564 ~ 17953069 (-) False G2112324
TU2415618 lncRNA downstream 262478 17949564 ~ 17953069 (-) True G2112324
TU2415504 lncRNA downstream 398706 17816606 ~ 17816841 (-) True G2112232
TU2415323 lncRNA downstream 403858 17811102 ~ 17811689 (-) True G2112062
TU2415294 lncRNA downstream 425229 17790031 ~ 17790318 (-) True G2112035
TU2415916 lncRNA upstream 8322 18225370 ~ 18228651 (-) False G2112604
TU2415918 lncRNA upstream 8788 18225836 ~ 18228651 (-) True G2112604
TU2415919 lncRNA upstream 14561 18231609 ~ 18231993 (-) True G2112605
TU2416025 lncRNA upstream 78240 18295288 ~ 18300414 (-) True LOC110508660
TU2416220 lncRNA upstream 165185 18382233 ~ 18382467 (-) True G2112879
XM_036966072.1 mRNA downstream 476 18190804 ~ 18215071 (-) False LOC110508659
XM_036966071.1 mRNA downstream 477 18206497 ~ 18215070 (-) True LOC110508659
XM_021589347.2 mRNA downstream 39975 18102546 ~ 18175572 (-) True LOC110508658
XM_021589348.2 mRNA downstream 39976 18102546 ~ 18175571 (-) False LOC110508658
XM_021589349.2 mRNA downstream 39978 18102546 ~ 18175569 (-) False LOC110508658
XM_021589352.2 mRNA upstream 79392 18296440 ~ 18300984 (-) False LOC110508660
XM_021589353.2 mRNA upstream 144016 18361064 ~ 18365938 (-) False cdc20
XM_021589355.2 mRNA upstream 144016 18361064 ~ 18365995 (-) True cdc20
XM_021589357.2 mRNA upstream 155605 18372653 ~ 18375659 (-) True fitm1l
XM_036967044.1 mRNA upstream 211776 18428824 ~ 18448415 (-) False LOC110508665
TU2414937 other downstream 958152 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 1415678 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 2504618 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 2611084 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2660650 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 244126 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 282493 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 440505 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 524870 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 567849 18784897 ~ 18785322 (-) True G2113320

Expression Profile