RNA id: TU2416025


Basic Information

Item Value
RNA id TU2416025
length 1524
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110508660
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18295288 ~ 18300984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATGTCAAGAAGAGCAACGCCTTCACCTGAATGAGCCTCTCTCACAGATGCCCTAACTACGTCGACCGGCCATGGTTGTAATATTTACTATTGATTGGCACACTATGAGGTGTTCAATCTGAAAATCAACTCTTCGGCATATACACGTCGTTCTAACCGGACCATCCGTATGCGAATGGGATTCGGTATGAAAATGCGTGTTGGAGATGTAGGCTAATTCTAAAGGAACCTTCAACTATTCTGAACATCAGCACAGAAGaatattttgccagaagcgctgtggaacatccaggtgttcttttgcgaacttcagacatgcagccattctttttttggacagcagtggcttcttccgtggtgtcctcccatgaacaacgttcttgtttagtgttttacgtttcatagactcatcaacagagatggcATGTTCCAGAGaattctgtaagtctttagctgacactaggattcttcttaacctcattgaacattctgcactgtgcttttgcagtcatctttgcagggaagccactcctagggagagtagcaacagtgcagaaatttgtcttaccgtggactgattttagagaattttgtaaccctttccagctttttgcaagtcaacaattcttaatcttaggtcttctgagatctcttttgtttgaggcatgatTCAcgtcaggcaatgcttcttgtgagtagaaaactcacaaaatgtgaggtttttttatagggcagggcagctctaaccaacatctccaatcttgtctcataggttagctgactccaattagcttttggaaatgTCATTTGCCGAGGGGTTCACATACTgttcccaacctacactgtgaatgtttgaattatgtattcaatatattttgtgtgttattagtttaagcactcTGTTTGTCCATTGTctatgaagatcagatcaaatttgatgactaatttatgctgaaatccaggtaattccaaaaggttcacttacttttttcttgccactatgGTGATGTTGGGGTAGTGCTGGACATGATTAAGATGAAGTTGAACATGTTTGACATGTTCCGTTAGGTATAGCCCGATGTCTAACATGGACATCACAGCAAGATCCAAACTGCTTTAATATTGACTCAGAAGATTGAACATGCTTTGATTTTCTATACAGAGTAAACAActtctttcttgaactgcattgttggttaagggcttgtaagtagtatttcacggtaaggttgtatttggcgcatgtgacaaagtttgatttgaactgGAGTTTACCATGTCCCAGCCAAGTATTTTGACAGCCTAATATTTGTATTTCATGTGAGGAAAGTCAACTCCCCCTACAGGGAGTGGGCTTGTTGTAAATGTGTGTAGTgtcaagatgtatgtaaactatCAATGTTGGCCATGTATTTCAAAATGTATTCTGGTTTGATAACATCTTTAACAATGTATTTTTTTGAAAATTAAATTGACTTAATTTGATAACAATACATGTGATACTACTAAAATATCAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2415919 lncRNA downstream 63295 18231609 ~ 18231993 (-) True G2112605
TU2415917 lncRNA downstream 66637 18167839 ~ 18228651 (-) False G2112604
TU2416220 lncRNA upstream 81819 18382233 ~ 18382467 (-) True G2112879
TU2416221 lncRNA upstream 82198 18382612 ~ 18382899 (-) True G2112880
TU2416229 lncRNA upstream 90849 18391263 ~ 18391594 (-) True G2112888
TU2416233 lncRNA upstream 95878 18396292 ~ 18396515 (-) True G2112892
TU2416206 lncRNA upstream 113148 18413562 ~ 18418931 (-) False G2112867
XM_036966069.1 mRNA downstream 72443 18215198 ~ 18222845 (-) False LOC118944819
XM_036966067.1 mRNA downstream 72700 18215198 ~ 18222588 (-) False LOC118944819
XM_036966070.1 mRNA downstream 72704 18215199 ~ 18222584 (-) False LOC118944819
XM_036966068.1 mRNA downstream 72706 18215200 ~ 18222582 (-) False LOC118944819
XM_036966072.1 mRNA downstream 80217 18190804 ~ 18215071 (-) False LOC110508659
XM_021589353.2 mRNA upstream 60650 18361064 ~ 18365938 (-) False cdc20
XM_021589355.2 mRNA upstream 60650 18361064 ~ 18365995 (-) True cdc20
XM_021589357.2 mRNA upstream 72239 18372653 ~ 18375659 (-) True fitm1l
XM_036967044.1 mRNA upstream 128410 18428824 ~ 18448415 (-) False LOC110508665
XM_036967038.1 mRNA upstream 128410 18428824 ~ 18472060 (-) False LOC110508665
TU2414937 other downstream 1037893 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 1495419 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 2584359 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 2690825 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2740391 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 160760 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 199127 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 357139 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 441504 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 484483 18784897 ~ 18785322 (-) True G2113320

Expression Profile