RNA id: XM_036967044.1


Basic Information

Item Value
RNA id XM_036967044.1
length 6579
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110508665
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18428824 ~ 18481333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagagagagagagagagagagagagagagaaggagagggagcagCATTCAGTTCAGCCTCACAGCTTCATCTGATCAGTTCAgagcacagagagaaacacacaattACTACACCAGCACACAAATAGTCTGTACTTCACAGAAACACCAAATACCAAAGATAGAGTACATTACCAGCCTTCCTTACAGCCAAGGGAAGATTCCTTTACTTTGCTGTCTAGAAGAATCTAGAAGGTTCTAGAAGAATCTAGAAGCagcggagagaagagagagagaggtgaggatgtCTTCTCTCTCCAATCAGCAGCAGCAGAGTGGTGGAGGTGGACAGCGCTGTGAGTATACTGAGCTGGGCAAGGTGCCCTCTGTCTCTATGGCGTCTCCTCAGCAGGCCCCCCAGGGCTGTGACCGGCAGCAGGACCAGATGGGACCACAAGGTTTCTGGGGCAGCCCAGGGGCACCCAGGCTAACTGACGAGGACAAGCTGTCAAGCCTCTTTGATGGACCTTCATCTGGATCAGGGTTCAAGGTGGAGTCGTCTGACCTCAAGGTGCCAGGGAGGATGGGTGTTGGACTCGGGGCACCTTTGGGTCTGGGCAGTGCTTGGGAGAGCCCCACAAattccctctcctcttcaccctctccaGCCTCCCCTGGGAAACTCTTCTCTACCCCGGGACGAGAACACAGGGCCAATGGAGCTGCAGCCCTGCGGGTGTCACCTGCTGTGCAACATGACGCCTCACCGTTCCCCAACACACAAAAGGTGGACAACTGTGTATGGAATCCCTCCTTCTCTGGGCCACCCCACACAGGCCTTAAGCCTGCTGTTCAGACTTCTGCACCTTCACCTGCAGACAACTACTGTGTCATTGGTGTTGTCAACGACAACTACTCTAAGGGTGGAAACTGCACTGTGTCAGGATTCTCTGAAGACCATGATGAGGACACAGGGCCTACTTTACCTCGAGGAGGAGGGACCGAGCAGCAACACAAAGCCGTGAGGCGCGCCATTTCTGACTGCTCCCACCTGTCTGTGCCGGGTAGCTTTGACTTCTCCCAGTACCCAGTGCAGCCTGGCGGACTAGTGGACCTGCCCTCACCTGGAAGTAACATTATGGGGTCCAAGTCTCCACACTCGGCTGTGCAACGCTCTCTGACagtgggggaagagagaaaaTCTGTGTCGCccacactctctcctctgtccccactGAGCCCTGTCAGGGCCCCCAACTCCCCTCCCCCTAGGAAAGGTACTGGTAATGGGATGTCACAGAGCCAGAGTGAGAGTGTCCTACTGCCGGTTCCCCTCACTGGAAAAACCTTCAACATCATCAATACCAAAAGCTCCATTGAGGTGAAAGCAGAGAATAAGGACAAACAAGAGAAGGCAGATTTCTTCCCAAAGACAGATAACTTGAACATATTTGAGAAGACGGAGAAGTCCGACAAGatggagaagaaagagaaagaagatgAATCTAAGAAAGTCGACAATGCCGACAAGACCTCAAAATCTGAGAAGATCCTCAAAGATGAAGAGAAGTTCCATAAGACGGAGAAGAATTATACAAATGAAAAAGTGGACAAGCCAGAGAAGACAAACAAAGATGAGAAGATGGAGAAGAAAGAAAATGGGGAGAAAACTGACAAGATGGTCAAAGCTGAAAATAATGAAAAGGCTGGGAAAGGTACTGCAAAGTCCCAAACAACCAACGGAAGCAAGCAGGACCTCACCAGCCCAGACAGTAAGGCCAAGCCTGCTGTTGGGTCAACCAAACCAAACTCTGCCAAAACACGGCCCACCTCTTTGTCCACTGGGGACGCAGCTGGCCCCCCAAAACGTTCCTCCCCCACCTCAAGCTCTGCCAATAAAAAAAGCCCCGTTACCAAGGCAACCACTCCCACTGCTTGCACCAAGCAGCCAACGCCCACTGCCAGTCAAACCCCTAAAGCCACCAAGTCCATGACTCCGGAAAACGGTCCTCCTGTGCCAAAGGCCAATGGCACGGCAAATAAGAACGGTTCCTCGACAACCGCCACTACTAAACCTGCTGGGCCACGCCCCTCTGCTAGTGCCCCCTCTCTGCGCCGCAACACTGTTCCCAAGACTGATGATACCAAGCCAGGTGACGTGAAGAAGCCTAGTACGCTGAAGACAACACCAACCAAGCCCAGGGTGCCTCGCACCTCCGCCACGGCTCCGAGCACTCCTGCCACCAACGGGGAGCAGCCTCGCCGACGCATCACCAAACCCCCAGTGCCCAAGCAGACCGCTATGGAGAGGAAGCCACCTGTACCCAGAGCACCTAGGACTCCCAGACCTATCAACGCACCCCTGCCGGACCTAAAGAATGTGCGCTCCAAGATCGGCTCCACAGACAACATGAAGTACCAGCCTACCGGCGGCAAGGTCTCCTCGGCGGGGGCTTCCCAATCCAAAGACGGCCCGGGCAAAGTTATGATAGTCCACAAAAAACTGGACTTCAGCCATATCACCTCTCGCTGTGGCTCCAAGGATAATATCAAGCATGTCCCTGGTGGAGGGAATGTCCAGATTCAGCATAAGAAGGTGGACTTGAGCAAAGTGACCTCCAAGTGTGGCTCTAAGGACAACATCAAGCACAAGCCAGGTGTGTCCACTACAGGGGGTGGAGATGTGAAGAATGAGGCTAAGGCCAATGGCAATGGTAATGGGAAGCCCAAGGTGGGGTCAATGGACAATATTGGCCTTGAGGCAGGGGATGGACCAATCAAGGCTGTGGGAATGCTGGAGAAAGCTGCAGGGAAAACATCTCCCCCTGGTGGAGCTCCAGCTACAGGCGCAGGAAGCATGGCTAAGGAGAACGGGAATAAGGCGACGCCTCCTCCTAATCCCTTTGGGGGTGACCCGATGGGCATGAACAAACGCATCCCTGAGACAAATTGAGTCTTATAAGCTGAGCTTTCGCGAGAACGCACGGGCTCGCACCACCAAACGGCGCCGACCTTATCTCTTGGCCCACCCCGATTGGCCCCCCCTCACCCCCATCGCAgcacctctctctgtgtttctctggggTCCGCCAGCTTCCTCCTCCACACCCTCCAGCTCCGACCCAACCCCTCGTCACCCAGCCTTGGGGCAGGGGGAAAAATACTGAATGCTAGCAGGACAAGGACTTCTTTAGCACATTCCAACTTACTCCTTTTACCTCACAATACAGTATCGCATCACTACTCTCTACCCTCGTTGAATATCTGTCTTAGTGGTCTCAGAAGAGCCCGTTTTAAAGTATAGAGACCAGAGTTCAGACAGATAGAGCAAGGTATTTCTGTACAGTGGAGTTTTGTCTTGCTGTAATATAAGGGGAGTAGTTTGACCTCAGAGTGAACCTTCTAGAATCTAGACCCTCAGTGTTCTGTTGTAGTTATGTCAGCGCCTGCTTCTTTTGTTCCAGCCTATAAGCACTGTTCTTATACGTATAGTAGTGCAGTCTTGATCAAAATCACAAACACCTACAGTGTCGCACTGTATATTAGTATGACTTTTTTGTCATAGACTATCACAATGAGCCACTGCTATGTATGTGACAGGCCTAACCCTAGATGTAAAACCTTCCTTACCATATCTAACCCTCTGGATGAGCATAGCCTCCCCTGTACTGTAAGGACCCCAGATTTCACTTATGCAGTACAATTTGATGATTAGTGAAGCACCCCTTATTGTGAGCATGTGGGACTGTCATGTCATCCCAATGAACAGCGGCTAATATGCCACCCCCTCACTTAACCAATTCAGTATGTCTAGATAACCTTCTGTAAacatgtgacccccccccccccccccccctccacacacacaaccctctcaaCAATAAGAAACTAGTAGGCTGTTACAAACAGTAGGATATTTAACATCTCTCTTTTAAAAAAACCTCTGTATTGTGTTTTCGTAAATTATTGTGACAATGAGCTGATGTGTTGTTCTGTTGTTTAATCATCGATATACCCTTTTTCCTTTTACTGTTACATCTCTCTGAAAGCAATACAGTGAGTGGTCTTTGCCTGAGGATACAACTAGCTCTTACACACCCGTACTCGCACATGTAAACTACAGTACGTTACAGtcaagagagcgagcgagaaaaaCCCTCTGAGGGTCTGTGCACAGAGACTGGATGCCTGAGGCAGGACAGAATAGTAAGCAGGAGGCAGCAAACAAAGTGAGGAAAGGCCTATGATTGCACCAGGAGAGTGGAGATACTCCAATGACGATCAAGTCTCTGTAGTGTTGGCCCAATCGTTGGGACAGGGAAGACGAATAGAGAGCCATGTTGAAGGAAAGCAAGATTTAGATAGAGTTAACAATATTAgcgtaaaaatccaaatacaaTTTTAAGTCAATATCAAGAGGAGTTTTTGAAGGACAAAGATGATCATTGATCTCCAATGTAACAATTGTACATTTGAATTATTCTCAACTAATCTACTGTTAAATATGAATTGATTTGAATGGCTGCTTATGCTACTGGTTCCACTGTGAATAGTGACATTATTGTGTAACAATAGGGCACAATTGCTTAACCAAGCAAATATATATAGCAATATATATATAAGCTAATTACTCTGTTTAACTTGCTATcggttttgtgaagaggttggcgGATGGAATTGTATAGCAATACATGACTATGAATTAGgatccggtgtgtgtgtgtgtgtgtgtatagtagtTGAACGAGCTTTGGGATGGTCTCATTTTGTGATCAACATTTAGACGTCTGTGGAGTCTGTCGGATTTGTGGTACGTTGCCGGATCAAGATCAAGGACACCCGGGTGGCCTTTAAAATACTGCTAGTTTGGCTCTTAGAGCATGAGAATTGCCGTTCCTTTTGGAGATATCCATCACACTACTCCAACAAGAGGGATAATGGCCACAGATTTCAATGTGTAATTGTGCCTTGTAGATTCTCAAGGCTGAACTGTAACAGGTGTACAGTTCCCcaaaaaaagtacatttgtgtCCCCCACCCTAAAACACTTTTACTTTGATTTATTTGTTGTACTGTCGGTAGGGTGTAATCGGAATCTATTTGAGTGTGTGCACTGCGGTGGAGGAAATAATAGTGATCGTCAATGGCCGAGAGAATCAAAGAGCAAGTGATCAAATTATCGAGAAAGAAAAGCAAAAGCACCTTATGATATTTTTAAGGTATTCTTTCCCCCAACATTCCCATGGTTAGTTCAAAAAATGTGTAATGAAATTAATTATTCCTGAAGACTAAGCCTTACACTGATGAAAGCAGATGAAAGCACTTTGAATGCACAGTGGCATGTACATTTCATGTTTGAGCTCTACAGTATGTTTGAGTGAACTGTTGCCATGATTGGATGAACAGATTTGTCTTTTAGTCTCCTTGGTGGTAACCTTGCTCACTGGTCACGTTAGTGGACTTTGGTGTCATGCTTTGGGTACAGTGGTCACTCACGCTCAGTCTGTTCTCCTTGTGCCTGTTAGGCATCACGTTTATGAACACTCACCTTTCCAACGCTTAAATGCTAACTTGCACCACCACCCTTCCATCAGTCTTCACACATTCGTTTGTATATAGACATCCACATGTTTTCATCACCACAGGAGAACAAGGTATTGATGTTAGGGTCTTTATGGATGTTGAGAAATGTCTTTCACGTTCATGAACCCATTTCCGGAGAGTGTTTTCTTTCTGGAGTCTGCCTTTTTTCAGAAAGGGCTGAAGTACAAGAATGTTTTTACAATTTAATATATTAAAGATGCAAGATATGAATATAATATGTATTAACCTTTTgttttgttgtaaaaaaaaaatcacaataagACACTTATACTCAATATAAATTTGACTGACAGTAGGAAGTGTGTGTCGAGTCCAGTATGGGGACTGCAGCAGACTGTGAATAGCTTAAGCATTCAGCGATGGTTAACTTCTCAATGGATGGTCTAGGTGTGCTTTTACCCACTCCAACTCTATAGTGGATAAACTGATATTTGCTTGAATAAATGAACACTTTTATCTGCCTCTTACACGTAGACTTACTATATGTAGAGAATCTACCACAAACAAAGAATCATCCGATTGAATGCATATTCTTCCAAGTGTTTTGTGTCGCTGGTGAGCTTATCGAGTGCTCAACTGTAATCATGAACCAGATATTGTGAGGATAGGTTGAAGGTCAAGCTCCCACATGcgacacctgacacacacagccCTTGAATGTCGTCCAgacacaccccccacccccccaccccttgtGAGACTAACAGTAACTGTCTTTTGGCATGTGTTATGTAGTGTGCTTCTGTAAAGCATCAAGGAGCCCATAGCTGTGCTTCTTCTTAGAGCACACCTACAGTGTGTATTATTCTCCATAGTGCACACCATAAGAGCATGCAGAAGGCAATGGATTGTAAACATCTGTCATAGATAGGAGGAGTTAATTGTTTCCCTTTCGATTTGAGTAATGTAATTTGGTATGAAAGAGATGTTCATTGTGATTCATTGTTAACTAGTGATGTGAATATTAATCATGAAATAAaagacaagcaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416207 lncRNA downstream 8807 18413562 ~ 18420017 (-) True G2112867
TU2416206 lncRNA downstream 9893 18413562 ~ 18418931 (-) False G2112867
TU2416233 lncRNA downstream 32309 18396292 ~ 18396515 (-) True G2112892
TU2416229 lncRNA downstream 37230 18391263 ~ 18391594 (-) True G2112888
TU2416221 lncRNA downstream 45925 18382612 ~ 18382899 (-) True G2112880
TU2416257 lncRNA upstream 28117 18476532 ~ 18477091 (-) True G2112910
TU2416266 lncRNA upstream 46619 18495034 ~ 18495262 (-) True G2112919
TU2416333 lncRNA upstream 116689 18565104 ~ 18565917 (-) True G2112985
TU2416340 lncRNA upstream 119551 18567966 ~ 18568246 (-) True G2112992
TU2416343 lncRNA upstream 121612 18570027 ~ 18570680 (-) True G2112995
XM_021589357.2 mRNA downstream 53165 18372653 ~ 18375659 (-) True fitm1l
XM_021589355.2 mRNA downstream 62829 18361064 ~ 18365995 (-) True cdc20
XM_021589353.2 mRNA downstream 62886 18361064 ~ 18365938 (-) False cdc20
XM_021589352.2 mRNA downstream 127840 18296440 ~ 18300984 (-) False LOC110508660
XM_036966070.1 mRNA downstream 206240 18215199 ~ 18222584 (-) False LOC118944819
XM_021589368.2 mRNA upstream 35930 18484345 ~ 18517197 (-) True LOC110508666
XM_021589379.2 mRNA upstream 389898 18838313 ~ 18849108 (-) False LOC110508670
XM_021589378.2 mRNA upstream 389898 18838313 ~ 18849139 (-) True LOC110508670
XM_021589380.2 mRNA upstream 416424 18864839 ~ 18879323 (-) True LOC110508671
XM_036966604.1 mRNA upstream 432275 18880690 ~ 18927009 (-) False LOC110508176
TU2414937 other downstream 1171429 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 1628955 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 2717895 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 2824361 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2873927 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 12759 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 51126 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 209138 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 293503 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 336482 18784897 ~ 18785322 (-) True G2113320

Expression Profile