RNA id: XM_036967036.1



Basic Information


Item Value
RNA id XM_036967036.1
length 4640
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110508667
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18579463 ~ 18658560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggGGGATGTGACGTCAACACGTGCAGCTGTTTTTGTTATCAACAATAGTTAAATTGCAACGCAAAGTAGCATGCAATGTCGTATTTATTTTTCTTGGCAACGTTCTAAAAATCGACAAGTAAATGGAAACATAGAGATAGAGGGCTCTTTTCATTAAAGGAATGGAAATATTTTCAGGAGGTGCCTGTTGTAAAATTAGGAGTCTTGTCTGCCGTAGGGACTATAGTTTAGAGAGGGAAGTTGAGTGTAAGAGGACTTTTTCCTGAGGGAGGAGTTGCAGAAACACTCCTTATTTGGAGAACGCCTGGTCACATGGGGGCAGAATCTAAGCGATATAGATGAGAGAGACGTAACAGGAGAGAACACATCGAACTGTGCCTTGAGATGTTGAGCGGGACTAAGGACGTTGATTTTCTCAGGCTAGAGTCAATGCAGTGAGGGGATAAAATGCCCACCAACTTCACTGTGGTCCCTGTGGAGGATGGCGGGGCCGGGAAGTCAAGTCTCGAACTTGTGTTTAGGGAGGAAGATATTACTCCACGACGACCCTATTCAGGAGATAACACTCCCAGAGAGAGCAGCCCTTTCATCAACAACACTGACCATGACCGAGGAAACTACTACGATGGCAAGAACATGGCTCTCTTTGAGGAAGAGATTGAGAGCAACCCCATGgtgtcctctctcctcaacaAGCTGGCCAACTACACCAACCTCACCCAGGGCGTCACTGAGCACGAGGAATATGAGAATGAGGATGGGGTCACAAAGATTGCAGTCAAGAGTTCTCAGATGGGCACCTTCATCGGTGTGTACCTGCCCTGCATGCAGAACATCCTCGGAGTCATCCTCTTCCTGCGTCTCACCTGGATCGTTGGCACCGCTGGCATCATGGAGTCCTTCGCTATTGTCGTCATGTGCTGCACCTGTACCATGCTGACAGCGATATCAATGAGCGCTATTGCAACAAATGGTGTAGTGCCAGCTGGAGGCTCCTACTACATGATCTCCAGGTCTTTGGGTCCAGAGTTTGGTGGGGCTGTGGGCTTGTGCTTCTACCTGGGCACCACGTTCGCTGGGTCCATGTACATTCTGGGTACCATTGAAATCCTACTGACGTACATCGTGCCGAACACTGCAGTGTTTGTGGCGGAGAAGAAGGAGGACGAGACGGAGGCCATGCTGAATAACATGCGTGTGTATGGGACCTGCTGTCTGGCACTTATGGCTCTAGTGGTGTTTGTGGGGGTCAAATATGTCAACAAGCTGGCCCTGGTCTTCCTGGCCTGTGTGGTGCTCTCCATCATGGCCATCTACGCTGGAGTCATCAAGACCATCATAGAACCACCCAACTATCCAATCTGTCTCCTGGGGAACCGTTCCTTGCAGAACCACAACTTTGAGAAGTGTATGAAGACTGAGGTGATCAAGAACGTGACGTACACCACTGAGCTGTGGAAGCTGTTCTGTGGCAGCCCCCACCTCAACGCTACATGTGATGAATATTTTACCCTGAACAACTTGACTGAGATCCAGGGCATCCCAGGCCTGCTCAGCGGGGTCATCAAAGACAACATGTGGGGTGAGTACGGGCCCAGTGGGATGTTGGTAGAGAAGAAGAATCAGTCTTCTGTCCCAGTCCAGGATAACTCCAGAGATATCTACAAGCCTTACATCTTCAACGACATCTCCACTTTCTTCACTTTGCTGGTGGGAATCTACTTCCCCTCTGTCACAGGAATCATGGCGGGCTCCAACAGATCTGGAGACCTGAGAGATGCCCAGAGATCGATTCCCATCGGCACCATCCTGGCCATAGCAACCACTTCTTTTATTTACATGACCTGTGTGGTCCTATTTGGTGCCTGTATCGAGGGTGTCGTTTTGAGAGACAAATTTGGGGACTCGGTTAAGAAGAACCTGGTGATTGGAACTCTGGCATGGCCTTCTCCGTGGGTAATCGTGATTGGCTCCTTCTTCTCCTGCTGTGGTGCAGGGCTGCAGAGCCTCACCGGCGCCCCTCGCCTGCTGCAGGCCATAGCACGCGATGGGATCGTCCCCTTTCTGCAGgtGTTTGGTCATGGTAAAGCCAATGGGGAACCTACCTGGGCCCTCTTGATGACTGTTGGTATCTGTGAGATTGGAATCCTTATTGCATCACTGGATGCTGTTGCCCCCATTCTCTCAATGTTTTTCCTGATGTGTTACCTGTTTGTCAACCTAGCCTGTGCCGTCCAGACACTGCTACGCACTCCCAACTGGAGGCCCAGGTTTAAGTTTTACCACTGGACTCTGTCATTCCTGGGGAtgagtctctgtctctccctcatgtTCATCTCCTCCTGGTACTATGCCCTGGTAGCCATGTCCATTGCAGGATGCATCTATAAGTACATTGAGTACAGAGGGGCAGAGAAGGAGTGGGGAGACGGGATCAGAGGGCTGTCCCTGAACGCTGCTCGCTACGCTCTGATCCGCCTGGAGGAGGTGCCAACACACACTAAGAACTGGAGGCCTCAGCTACTGGTGCTACTGAAGTTGGATTCAGACCTGGGGGTGAAACACCCTCGTCTGCTGTCCTTCACCACCCAGCTGAAGGCAGGGAAAGGCCTGACCATCGTCAGCTCTGTGCTTGAGGGCACCTACATGACCCTGGGAGCTGAGGCCAAGAGCGCAGAGCAGAACGTTAAGTCGGCTATGCACCTGGAGCGTACCAAAGGTTTCTGCCACGTGGTGGTGTCCTCTAACCTGCGGGATGGTTTCTCCCACCTGATCCAGTCGGCAGGGCTGGGGGGCATGAAACACAACGCCGTTCTCATGGCCTGGCCTGGGGGCTGGAAACAGGCTGAGGACTCCTACCCCTGGAAGAACTTCATTGagacagtgagagagactacGTCAGCCCATCAGGCCCTGTTGGTTGCTAAGAACATTGACAAGTTCCCCTGCAACCAGGACCGTCTGGGGGAGGGCACCATAGACGTGTGGTGGATTGTTCACGATGGAGGTCTTCTCATGCTGCTGCCTTTCTTACTGCGCCAACACAAGGTGTGGAGGAAGTGTAAGATGCGTATCTTCACAGTGGCTCAGATGAATGACAACAGTATTCAGATGAAGAAGGACCTGCAGATGTTCCTGTATCACCTCCGTCTCAACGCtgtagtggaggtggtggagatgCACGATAGTGACATTGCAGCATTCACCTATGAGAAGACCCTGGTGATGGAGCAGCGCTCTCAGATGCTGAAACAGATGCAGCTGTCCAAAACcgagcgggagagagagGCTCAGCTGATCACTAAACTGGGCACTAAGTCCCATGCCAACCTCAGTGACACAGCTACCGCCACTTCCGACCACCATGTCCACATGACCTGGACCAAAGACAAGCTGATCGCCGAGAGGAACCGTAAACGCGGCGAGCCGAACGTGGGCGTGAAGGACCTCTTCAATATGAAACCAGAGTGGGAGAGTCTgAACCAGTCTAACGTGAGGAGGATGCACACCGCGGTCAAGTTGAATGAGGTTGTGGTCAACAAATCCCAGGGAGCTCAGCTGGTGCTGCTGAACATGCCTGGACCGCCCAAAAACAAGGGTGGTGACGAGAATTACATGGAGTTTCTGGAGGTTCTTATGGATGGACTGGACCGTGTGCTGCTGGTACGTGGCGGAGGCAGGGAGGTGATAACAATCTATTCCTAGCGCCAACAGACACGGGCGGGTATGGTGCAGCCTCAGAGAATCCGGCGAGGTCATCCGGACAAATGGCTGGGCCTCAGCCTCCACCACAGTGCCAGGAGAGGAGTGGGTCGCCCCTATACTGTAGTATGGGAGGATAGTAGGGGGCTGCCTCCACACGCGGAGCAGACTAAGCACACACTGCTGCTGACTGGAGGACAACAGAGGGCACTCTGGATAATCTTTCCATTTCTTATTGTCAGTCGTTAGGAATAGGAATTCTTTCAGTTGAACAAAGTGCATAAGTAATGATATTAGGATGGATAGAGATGACCTCGGATTACATGGCTCAGGACTCTAATGTAGTATGGTCTAGCCTAGCTGACATAGGATGTAGCTTGTAAGTCCAGATAGTAGACGGGTGTTTAAATCCCAAGTTAGGCAGCCTACTGTGGTTGTGCTCTGGAGTGAGCCACTtgccctgtagtgcactacttttgacgagagctcttatgggccctggtcaaatgtaatgcactatatcgggaatagggtgccatttggtagaACTGGCCTTAAGCATAAGCGGTCGCGTTGGGCCCCACAGCCTCTTGTGAACAAAAAAGGAACttagtcggggtctcaactttcTGTTATACACGAGGTGAAATTTGGTTGTGCGTCATTATTTCAGTCATAGACCGTCAATCGGTAAACAATGTCAGCCAAAAAAAATGTTGATTGATATTATTTTTGtcaatatatattttcttttaggtggtagatcagctttaatatcgCAGATGGATTGTGGCTTCCAAACCTCAAACCtctacatttttatatatattacacagtaccagtcaaaagtttggacacgcctactcattccagggtttttctttatatttgactgttttctacattgtagaataatagtgaagatatcagaactatga

Function


GO: NA

KEGG:

id description
K13627 SLC12A7, KCC4; solute carrier family 12 (potassium/chloride transporter), member 7

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2416344 lncRNA upstream 8286 18570906 ~ 18571180 (+) True G2112996
TU2416327 lncRNA upstream 17876 18561307 ~ 18561590 (+) True G2112979
TU2416324 lncRNA upstream 20624 18558622 ~ 18558842 (+) True G2112976
TU2416322 lncRNA upstream 21657 18557598 ~ 18557809 (+) True G2112974
TU2416312 lncRNA upstream 27227 18551941 ~ 18552239 (+) True G2112964
TU2416435 lncRNA downstream 45124 18703684 ~ 18703950 (+) True G2113081
TU2416442 lncRNA downstream 81688 18740248 ~ 18740739 (+) True G2113088
TU2416370 lncRNA downstream 110279 18768839 ~ 18769063 (+) True G2113017
TU2416443 lncRNA downstream 119930 18778490 ~ 18778729 (+) True G2113089
TU2416444 lncRNA downstream 129186 18787746 ~ 18787986 (+) True G2113090
XM_021589358.2 mRNA upstream 159459 18406183 ~ 18420007 (+) True LOC100136150
XM_021589356.2 mRNA upstream 208582 18366089 ~ 18370884 (+) True LOC110508663
XM_036966799.1 mRNA upstream 225094 18317480 ~ 18354372 (+) False LOC110508661
XM_021589376.2 mRNA downstream 14742 18673302 ~ 18724171 (+) False LOC110508668
XM_021589371.2 mRNA downstream 35952 18694512 ~ 18724171 (+) False LOC110508668
XM_021589372.2 mRNA downstream 35952 18694512 ~ 18724171 (+) False LOC110508668
XM_021589374.2 mRNA downstream 35952 18694512 ~ 18724171 (+) False LOC110508668
XM_021589375.2 mRNA downstream 35952 18694512 ~ 18724171 (+) True LOC110508668
TU2415395 other upstream 675542 17903198 ~ 17903924 (+) True G2112127
TU2414674 other upstream 823885 17754937 ~ 17755581 (+) True G2111491
TU2414638 other upstream 870837 17708256 ~ 17708629 (+) True G2111457
TU2414472 other upstream 1163234 17411144 ~ 17416232 (+) True G2111300
TU2414198 other upstream 1620614 16953784 ~ 16958852 (+) True G2111044
TU2416413 other downstream 8555 18667115 ~ 18668496 (+) True G2113059
TU2416973 other downstream 417517 19076077 ~ 19076418 (+) True G2113578
TU2417581 other downstream 964908 19623468 ~ 19636753 (+) True LOC110508695
TU2418949 other downstream 1783173 20441733 ~ 20442169 (+) True G2115369
TU2419398 other downstream 2182010 20840570 ~ 20842003 (+) True LOC110508722

Expression Profile


XM_036967036.1 Expression in all Baseline Samples

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XM_036967036.1 Expression in each Bioproject

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XM_036967036.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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