RNA id: XM_021589374.2



Basic Information


Item Value
RNA id XM_021589374.2
length 5773
RNA type mRNA
GC content 0.53
exon number 42
gene id LOC110508668
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18673302 ~ 18724171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGAAGTGAGCCAGACGTGGTGTAGAGCTGCTGCTCTTGCTGTGCTGCCTGTGAAATACCTAAGTCTGCGTGGTGCTGAGGGGGTCTGGAGCAGGGGTCACCGCTaatcacagagcagagcagaacagagagagagagagagcgcacagTTAGaagcaggtgagagagagagcagatagaagcagggaagagcgagagagagagagcagatagaaGCAGGGAAAAGAGTGGAGCATGAGAGCTGATCTGTGAACATACTGGAGAACATACATCTTAAGTTTTTAGTTGGTAGTTGGAGCATCAAGACAGGATGGCTGTCCTGCGTCTGTGcagtctgctgctgctgctcatggCTCCTGTTCATGGCCAATGGTGGAGTGTGCTCTGGGGGAATGCACAGGAGATGACCACACAGCCCCCCACCACCGAGGTCCTCACCACCACCAAGGTATTTTGGACAATGGAAAGGACAGAGGTGGGCCAGGTGGGGACCCAGACAGAGGTGTACACTACTGCACCTGTTCAGAGTACACCTCTACAGAGCACACATGAGCCCGCAGGTGCTGGAACAACAGAGATCAAGCCCAAGGCTAAGAAAATACCTCTGAAAATGTGGAAGAGTCGTGAGCTTGGCTCTACAGGCCACCTAGACCTGACTGAGTTGATCGGAGTGccgctccctccctctgtctcgtATATCACCGGCTATGAGGGCTTCCAGCCGGCCTACAACTTCGGTCCCGGCGCCAACATCGGACGCCTCACCAAGACCTTCATGCCCGACCCTTTCTTCAGGGACTTTGCCATCATCGTCACCATCAGGCCCAGCAGCAACCAGGGAGGGGTGCTGTTCGCCATCACTGATGCCCAGCAGAGGGTGGTGCAGCTGGGGCTGGCGCTGACAGCCGTGGAGGATCAGACTCAGAGGATTCAGCTGTACTACACCGAGGGGGGCCAGGAGTCCTCACACAGCCAGCAGGTGGTGTCTTTCAAGGTGCCTGATATGACCAAAAAGTGGACAATATTCACTCTGTCAGTGCAGGACCAGGAAGTGTGCCTCTATATGAACTGTGATGACTTCCAAGCAGAGACCTTCCACAGGAGCAGCCGCCAGCTCAGCTTTGAGCCCAGCTCAGGCATCTTTGTGGGCAACGCTGGAGGGACTGGCCTGGAGAGGTTTGTGGGCTCTATCCAGCAGCTGGTGATCAAATCAGACCCCAGGGCTGCAGAGGAGCAGTGTGAGGAAGATGATCCCTACGCTTCTGGGGATGGGAGTGGGGCCGAAACGATGAATGACATGAAACGAAGAAAGGAAACAACAAGGCCAGAGGACATGCTGAGCGGGCCTGTGCGAGCCCCGCCCACAGAGTCTCCGGAGGTGGAGCTAGATGAGTACTCAGGACACCTGACCCCCACAGAGGAGGCCCATCAGGAGATGCATCTCAGAGGTGCGGAAGGACCCCACCAGACAGAGGAACCAGAGATGTCAGGGGATGGTGGACCTCTTAGCCACAGACTGAAAGGAGAGCGAGGAGAGCCTGGGCCTATAGGTCCTGCTGGTCCCCGTGGCCCCCCTGGCCCCCCTggcccccccactctctctgagGGTAGAAGGTCTGGGCACCGCCAGCCAGGACCCAGGGGCCCTCTGGGGCCTTCAGGGCCAACAGGGGCCCCTGGGGTGCCAGGGAAGGACGGACAGCAGGGAATCAAGGGTGAAGATGGAGATCCAggacagagaggacCTCAAGGTTTCCCAGGTTTGGCAGGGGAGGTTGGAGTCAAAGGAGACAAGGGGGACCCAGGAGCAGGACTACCAGGGCCTCCAGGCCCCCCTGGACCTCCCGGACCCCTCAGATCACACAGTGTGCCATATGGAGAGGATGCACTCGGCTCTGGTTTTGGAGACCTTGACAATACAGAATTGATCAGAGGTCCTCCTGGCCCTCCAGGTCAACCTGGCCCCCCAGGACCCACCAGCCCCTTCAACGCCTCGGAAGGCCTGTTCACTGGACAACCAGGTCCTCCTGGCAGATATGGCCTTGTTGGGAAACCTGGACCTCCGGTGAATGAGGATTGGTTTAGTGGTTCTGGCTTGGGCTCTGGGTTTGGCTCTGAGTTTGGCTCAGGGTTGTTCGGCTCTGGGCTTGGTTCTGGCGAGGGTCAACCTGGTCTGGATGGGGATGTTGGGCCGACGGGGCCTAAAGGTCTGAAGGGTGAACAAGGACGAGTTGGACCGAAGGGTGATCCAGGTGACCAAGGGTTGGCAGGAGCTACAGGGCTGAGGGGACCAGAGGGGAAGAGGGGTGACACTGGCCCTCGGGGGCTGCCTGGCCCCCCCGGACCCCCAGGAGCAGGATTGTTTGTCGAGGATATGGAGGGGTCTGGGAAGAATGACATGCTCCTTGGCGTAGGACTCAAAGGCCCTCAGGGACCTCCTGGTCTTCCTGGCTCTGCAGGACCAAAGGGTGAAGATGGGAAGGATGGGGCTCCTGGGTTGTCAGTGAAGGGTGAGCCTGGTGCTCCTGGCCCTGAGGGACTCCAAGGGCTAGCTGGACTTCCTGGCGCCAGGGGATTGAAAGGAGACAAAGGCGATCCAGGACCAAAGGGAGAGTGTGGTCCTGATGGACACAGTGTACCTGGTTCTCCTGGTCCTCCCGGCTCTCCAGGTCCCATCATCAATCTGCAGGATCTCCTCCTGAACGACACAGAGGGCATGTTTAATCAGATCCGTGGGCCCCCTGGCCCGATGGGCCCCGAAGGAGAGCCTGGCAGAGCAGGATTCCCTGGCCCAAGAGGACCAAAGGGTGACATTGGGCTTCCTGGTCTTCACGGTCCACCAGGAATGAAGGGTGCGAAGGGGGATTCTGGTGTCACGATCGCTGCCGACGGCACTGTGTTGACAGGTGTCAGGGGCCCTCAGGGACCAAAAGGAATAAAGGGTGAGCGTGGGTTCCCTGGAGTTGCTGGTATCATGGGACCAATCGGACCAACCGGACAAAAAGGAGAATACGGGTTCCCTGGTCGACCGGGACGACTTGGAATGGCAGGGAAGAAGGGAGACAAGGGTGATGCCATTGGTCAACCAGGACTTCCTGGTCCTCCTGGCCCTCCCGGTCCCCCAGGACCAGTAATAGGACTCAATGGAGTGAATGGCAGCAGGGGATCATCACAAGGTAGCAGGAGAGGAAACAGAGGTGCTAAAGGAGAAAATGGAGAGGTTGGACTGCCTGGAACACCTGGAGAACCAGATGGTGTTCTTCCAGAAGGCTTTGTGGGAGAAAAAGGGGACGTGGGCTATGAAGGAATGAAAGGAGAGAAGGGTGACGCTGGGTTGCCTGGCCCACCAGGTCTTCCTGGGAGATCAGGCCTTGTGGGGCCAAAAGGTGAATCCATTGTTGGCGCCCCTGGTCATCCTGGAGCTACTGGTGAACCAGGAGTTCCTGGCATTGGACGACCAGGCACTCGGGGGCCCCCTGGCCCTACTGGACCCCCTGGACCACCCCCTGTCTATGCCTCAGCTGTGAATATTCCTGGCCCACCTGGGCCTCCTGGTCCTCCTGGGATTACTGGCTATGAAAATCTGGTGACCACATACAGGAACACCATCACTCTGATGAGGGAGAGCCACCGTGCTGCAGAGGGATCCATGGCCTACGTCTCAGACAAGGGAGATCTCTACGTTAGAGCCAGAGATGGCTGGCGCAAGGTTCAGCTTGGTGAGCTGATCCCTGTCCCAGCAGAGACCCCATCCTCCGCATTGTCTCAGGCCCTGAGCAGACCACACAGGCAGGAACTAGTTGGAACTAGCTACATGCCCAACTATAATGTCCTACCTCATACAGTTCACTCAGTACCGGGGCTGCACTTGGTGGCCCTAAACGCTCCGTTCTCTGGGGACATGCGTGGCATCCGGGGGGCAGATTTCCAGTGCTACCAGCAGGCCCGCACCATGGGCCTCACCGCTACCTACAGAGCCTTCATGTCCTCACACCTCCAGGACCTGGCAACCATCGTCAAGAAGGGAGATCGCTACAGCATGCCTGTCATCAACCTCAAGGGAGAGGTGCTCTATGGCAGCTGGATGAACATCTTCTCTGGGAATGGTGTGTTGGACCCATCAATCCCCATCTACTCCTTTGACGGACGGAACGTCATGACGGACCCCACTTGGCCTCAGAAGCTGGTGTGGCATGGCTCCAGCACGGTGGGAATCCGTATGACCACTAACTACTGCGAGGCGTGGCGGGCAGGTGACATGGCAGTGACGGGCCAGGCCTCTCTCCTCCAAACAGGCAGACTGCTGGGCCAACACACCCGCAGCTGCTCCAACCGCTTCGTAGTGCTGTGTATCGAGAACAGCTACACTGACCACAGAAAGGTCTAATTAACCTCAACACACACGTCTagtatacacactctctctcatacacacacacaaaactagaTCTCATTCATGTTTTCACGAAAAGCATGTAAAACTAAGCTATTGACACATGTTCAAGCAAATCcagtacacacaaacaaacacacgcacacctcTCATTGACAGCAAACATCCATGTGGACCACACAATAAactaactccctccctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtctcctaTTAACAAAGAGCAGTTATGTGCTGGACCACAAGAGACACTTTTACACTATTTCATACTGACCACAGATGAAACTCCCCACTTCATTAACCTCTCATTATTAACCTTCCATCAACACAGCATCACTGCTTTGCACTTGTCCCTAATCTAAGTTTTCCTGTCCCTTTAagaaaaatgtaaatataatgtAAATTGCTTCCTGTCAAAAGCACTGCATAACTCCAATTCACTTTGTGTTTAAATTGACTGAATAAGGAATACCAAAGATCTGGTAATCAGCAACCAACCGACTAACACACTGTTTCTGCTGAAGTAATCATTAACACATTTCTTTTGTTGGTTTGCTCAATTTAGTCTTATTCTTAAGTGCCCAGTAGAGTAGTTTGCATAGAGGCAACAACAGTTCTAACCTTTTGTGGATTACTGTATCAGTCCCCAAAACAATGTGATGATATGATGAAATTAGGAAGACTGGTcttttctgtttttctgtgataaaaatgtataataaaataCTTGTTTTCAGACAAGGGACCTTTTTTTCCTCTTTAGGCCTTGAAGTCATTTCGATGCACTGTGAGTTGATTTGAAAAGTTTGGGATGTTCCCATAGCCATGAAGGCTTTTTGTCTGTGAAAATTGTTAAGGGTTTTTCTGTTGCGAGTGATAACTTTGTCTTAATATTTCATGTTTCATTCTATGtttcacattttttatttatactGTAACAGCACATCATCTTAAATCTAGCAAAACATAGCTTCACTTTCAAATTAAATGAAATTGAAACACTACACGTGCTATCTAACCTGAAAGTTATTTTTATACGGTATTCTACTAATTGACTAACTCTAGATGTACTTTCAACAAATTTATAATCAAGAGCTAGATATTTTAGTGGCTTGGGAAATTATAGGAACAGTAACAACTCTAGAGCGCAAAGTATTTTTATATGTTGATTCATTTCACAGACGTGATAGGTTATATTTTTACAGTCAGGAAGATTGTCTTTTTTAAATTGGAAAGAAAATGTTTGACTGTCATTCAGAGAAATACAATGTTTGTACTCATTGACTGTTGCTCAgtgaataaatgtttgtttttttaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2416391 lncRNA upstream 67355 18602787 ~ 18627157 (+) True G2113037
TU2416344 lncRNA upstream 123332 18570906 ~ 18571180 (+) True G2112996
TU2416327 lncRNA upstream 132922 18561307 ~ 18561590 (+) True G2112979
TU2416324 lncRNA upstream 135670 18558622 ~ 18558842 (+) True G2112976
TU2416322 lncRNA upstream 136703 18557598 ~ 18557809 (+) True G2112974
TU2416442 lncRNA downstream 16077 18740248 ~ 18740739 (+) True G2113088
TU2416370 lncRNA downstream 44668 18768839 ~ 18769063 (+) True G2113017
TU2416443 lncRNA downstream 54319 18778490 ~ 18778729 (+) True G2113089
TU2416444 lncRNA downstream 63575 18787746 ~ 18787986 (+) True G2113090
TU2416445 lncRNA downstream 69218 18793389 ~ 18793687 (+) True G2113091
XM_036967035.1 mRNA upstream 35952 18579463 ~ 18658560 (+) False LOC110508667
XM_021589369.2 mRNA upstream 35952 18579464 ~ 18658560 (+) False LOC110508667
XM_021589370.2 mRNA upstream 35952 18579465 ~ 18658560 (+) False LOC110508667
XM_036967036.1 mRNA upstream 35952 18579466 ~ 18658560 (+) True LOC110508667
XM_021589358.2 mRNA upstream 274505 18406183 ~ 18420007 (+) True LOC100136150
XM_021589377.2 mRNA downstream 2083 18726254 ~ 18816586 (+) False LOC110508669
XR_002471341.2 mRNA downstream 125015 18849186 ~ 18865414 (+) True LOC110508672
XM_021589383.2 mRNA downstream 262526 18986697 ~ 19011641 (+) False LOC110508675
XM_021589384.2 mRNA downstream 262526 18986697 ~ 19011641 (+) False LOC110508675
XR_005040194.1 mRNA downstream 481201 19205372 ~ 19209070 (+) False LOC110508679
TU2416413 other upstream 26016 18667115 ~ 18668496 (+) True G2113059
TU2415395 other upstream 790588 17903198 ~ 17903924 (+) True G2112127
TU2414674 other upstream 938931 17754937 ~ 17755581 (+) True G2111491
TU2414638 other upstream 985883 17708256 ~ 17708629 (+) True G2111457
TU2414472 other upstream 1278280 17411144 ~ 17416232 (+) True G2111300
TU2416973 other downstream 351906 19076077 ~ 19076418 (+) True G2113578
TU2417581 other downstream 899297 19623468 ~ 19636753 (+) True LOC110508695
TU2418949 other downstream 1717562 20441733 ~ 20442169 (+) True G2115369
TU2419398 other downstream 2116399 20840570 ~ 20842003 (+) True LOC110508722
TU2420043 other downstream 2650324 21374495 ~ 21375078 (+) True G2116347

Expression Profile


XM_021589374.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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XM_021589374.2 Expression in each Bioproject

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XM_021589374.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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