RNA id: XM_036966605.1


Basic Information

Item Value
RNA id XM_036966605.1
length 4250
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC110508176
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18880690 ~ 18927013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGCAAAATGGTCTGCAATTGGTCGAAGCTTTGTGGTACCCAGGAGAAAGACCGTATCGCACAGCAGCATCATTGTAAGAATGGTCCGAAAACCGTCTGACAAACCTGGAACATGGCCCAGCGGAGGATATAGAATATCATATTCTTAGAACATCAAAACATGACAAATGCCGTAAGCATTTTGACGGTTCATCTATAATAGGCTATGATTCAAAGGCAGGTGACACTGACCCAGaACTTGTACCAGAACAGGTTTCTCGGACTCAGACTTGCAGCCATGGCCTCCCCGTGTCGTTCGTCTCAGAACCGTTGGCGCTGTAAGGACCACATCCGCCACAGCTACAACCCCGAACAATTCCGCAACGTTAATTTCCAGAATGGGGTGCCGGAGGATGTGGCGGCCATGTACCGCTCCACCAGCGACACGGACCTGGTGACATCACACAGCCGCTCCACGCTTACCGTCAGCACCTCGCACTACGCCATCGGACAGACCCAGGACATCCTCATCTGCTGGGACATCAAGGAGGAGGTGGACGCTGGGGACTGGATCGGCATGTACCTCATTGAAGAGGTGTCGTCTGAGAACTTTCTAGACTACAAGAGCCGTGGAGTGAATGGTTCCCACAAGGGCCAGATAGTGTGGAAGATTGAGGGCAACTCCTATTTTGTGGAGCCGGAGACCAAGATCTGTTTTAAATACTACCATGGTGTGAGCGGGGCCCTGCGAGCCACTACCCCCAGTTTGACTGTGAAGAACCCCTCAGTTCCGGTATTTAAGCCCGTCACCAATGAAGAAGTCCCCCAGAGCACAGGCAGTAGAAGACTCATCAGCTTCTCCCTCTCAGATTTCCATGCCACAGGGCTGAAGAAGGGGATGTTCTTCAACCCTGACCCCTACCTTAAGATCGCCATCCACCCCGGCAGGAACAGCATCTTCCCGGCACTGCCACACCACGGCCAGGAGAAACGCTCAGGCATCGTCTGTAACACCATCAACCCCCACTGGCAGAGAGAGCGCTTCAACTTTGTGTCTCTGCCCACGGACGTTCTGGAGATCGAGGTAAAAGACAAGTTTGCCAAGAGTCGTCCCATCATCAAACGTTTTCTGGGCAAGCAGTCCATGCCGGTGCAGAGGCTACTGGAGAAGCATGCTATTGGTGACCGTTTGGTCAGCTACACGCTGGGCCGAAGGGTGCCGACAGAACATGTCAGTGGACAGCTGCAGTTCAGATTTGAGATCACTTCCTCTATTCATCCAGATGATGAAGATATGTCTCTCAGTACAGAGCCTGAGCGTGCCGCTGTGCAGGAGACCAGTAACCAGGGGGAGGGCCAGTCCTCCCAGGCCCAGGGCCAGGCCGAGGACACCATGAGCCTGGGTCCAGGGGCTCCCGAACTCCCCATGGATGAGGAGGAAGACGCTGGAGCTCCAGAACTTCCAATTGGAGGAGATACTGTTACAGACACGCCCATGGAAGGGCATCCAGCAGGGCCTTTGGGTTCAGAGGAGCccatggatggagatggagacTCTGGGCCTAGCTGTTCCAGAACCAAGGCCCTAAAAACAGAACCAAGTCAACCAGAGGTCAATGGGGCTCAGGAAGAGGTGGCTGTGGCTGTAGCTGTGGCTGCAGAGAAGCTGCCCTCGGTAGAGGATAACAGGGAGGAAGGGGGGCAGCAAACCCCCTCCAGTCCTCAGCTTGCTGACCCAGAGCAGGGGGTGGACAGTACGCCAGCAGAGGGTCAGGTCATCCCTGCTGTATTGGAAGACATGGAGAGTGGAGCACCTGGGGAGCCAGCAGAACAGGTGGTGGGTCAGGAGGAAGGGGACGAGGAATGCTGCTCCCTGCGCATCAGGACCACCCCTAGGCGTAAGAACCGGCCCTGCTCCCTGCCCGTGTCGGAGCTGGAGACAGTCATCGCCTCGGCCTGTGGGGAGCCTGAGACCCCTCGCTCCCACTACATCCGcatccaccacctcctccacagtcTGCCCTCTGCCCAGCCAGGCAcccaggaggacagggagggagagggggctgAAGCTGAAACAGAGCCCGATCCAGACCCTGGCCCTGACCAGCTCAGCCCCAGGGTCCAGGATGGCTCAGAAGAGGATGAAACGGCAGAACCACTGACCCCCGGGCCCAGGAGGACCCTGCCTCGCAGCCTGTCCATCGAGCGTCTGTCCGACCTGGCCCTGCTACTGGACAGCGAGGGCCGCCACCCCCAGGGCCAGGTCAGGGGTGACCAGAGAGTGTCCGACGAAGACGACATGGAGCCCTGCTGCAGTGATTCCTGCTATGAAGGCCGAGGAGGCAGTCACAACCAGGCACCTCTAGTGGCTGTAGCCAGGATGTCTGTGGAGAGCAGGGATTTCCCCTCCCAGGAGGATGAGGACATGGAGGGGAACGGAGCGGAGAGCAGTGATTTCCCCTCCCAGGAGGATGAGAACATGGAGGGGAACGGAGCGGAGAGCAGGGAGCCAGGAGATGGGATGCCCCAGTGGAAGGTGGCCCTATCCACACAGGTCCAGAGCCCCCAGAGCTTCATAGAAAACGGAGAGTCTCCCGTAGCCGGGCCCAGTGGGAAGATAGGACGAGATTGTCCCCTACCGTCCAGTCATCCTCCAGTCAGCCAGCTTCCTGCTCTGCGTCATGATCCTCATCATTACCCCACTATAGATGAACCACTACCACCAAacTGGGAAGCGCGTGTGGACAGCCACGGTCGTGTGTTCTACGTGGATCACATCAACAGGACCACCACGTGGCAGAGACCCACCTCAGCAGCCACACCTGACGGCATGAGGAGGTCAGGATCCGTTCAGCAGATGGAACAGCTCAATAGAAGGTACCAGAGCATCCAGAGGACCATGGCCACAGACAGGAGTGAGAATGAAGGAAGCAGAAGCAGGAGTGAGAGAACAagcctcaacaacaacagcagtgaGACAGACTCTCCTTCGATGGCTAATGagCTGAGAAGAGacagctcctcttcctcctcctcctcctcgtcatcaTCTCCAGTCAACAGTCAGAAGATCACAGCTCTGTTACAGAGCCCAGCGGTGAAGTTCATCACACACCCAGAGTTTTTCACTGTCCTCCATGCCAACTATGGAGCCTACCGCATGTTCACCAGCAGCACGTGCCTGAAGCACATGATCCTGAAGATTCGTAGAGACGCTCGTAACCTTGAGAGGTACCAGCACAACAGAGACCTGGTCACCTTCCTCAACCGCTTCTCTGACGCCCAGTTTGAACTGCCCCGGGGCTGGGAGATCAAGACTGACCCTCAGGGCAAGAACTTCTTTGTGGACCACAACAGCCGAGCGACCACGTTCATCGACCCGAGAATCCCTCTTCAGAACGGTTGTCTGCCCAACCACCTGACCCACAGGCAGCACCTACAGAGATTACGCAGCTACAGTGCTGGAGAGGCCTCGGAGGTGTCCCGTAGTCGAGGTGCGGCCTTGTTGtcacggcctgggaacagtgtgGTGGCCGCGATGCGGAGCCAGCATCATCCTGATCCAGTGCCACAAGCTTATAATGAGAAGATCGTGGCCTTCCTCCGTCAGCCTGGAATACTAGAGGTTCTTACGGAGCGCCAGCCAGCCCTGTCCAGGAACCATTCCCTGAGGGAAAAGATCCACTACATCAGAACAGAGGGCACCCACAGACTTGAGAAACTAGCATGTGATGCAGACCTGGTGATACTGTTGAGCTTGTTTGAAGAGGAGATCATGTCCTATGTTCAGCCCTCCTTCCATCCCGGCTTCAGCTTCTCTCCGCGTTGTTCACCAGGGTCTTCACCACAGAACTCTCCAGGAATGTCGAGAGCGAGAGCGCCTGCCCCGTACCGGAGAGACTTTGAGGCCAAACTACGCAACTTCTACAGGAAACTGGAGGCTAAAGGCTATGGCCAGGGCCCAGGAAAGATCAAGCTTATCGTCCGGAGAGACCACCTGTTGGAGGGTACCTTTAACCAGGTCATGGCCTACTCACGCAAGGAATTACAGAGGAATAAGCTCTACATCACCTTCataggagaggaggggtacaCCAAAGCTTCTATTTACCTGAACACATGAAAAAGCTGGACTACAGTGGGCCATCCAGAGAGTTCTTCTTCCTTCTGTCTCAAGAGCTGTTCAACCCCTACTATGGCCTGTTTGAGTACTCAGCCAACGACACATACACCGTCCAGATCAGCCCCATGTCCGCCTTCGTAGAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416709 lncRNA downstream 92522 18807499 ~ 18807750 (-) True G2113342
TU2416708 lncRNA downstream 92940 18807017 ~ 18807332 (-) True G2113341
TU2416705 lncRNA downstream 95504 18804538 ~ 18804768 (-) True G2113338
TU2416698 lncRNA downstream 102433 18797608 ~ 18797839 (-) True G2113331
TU2416696 lncRNA downstream 104144 18795919 ~ 18796128 (-) True G2113329
TU2416790 lncRNA upstream 3491 18930504 ~ 18930906 (-) True G2113416
TU2416792 lncRNA upstream 5277 18932290 ~ 18932513 (-) True G2113418
TU2416800 lncRNA upstream 8891 18935904 ~ 18936124 (-) True G2113424
TU2416837 lncRNA upstream 13800 18940813 ~ 18941246 (-) True G2113461
TU2416859 lncRNA upstream 46277 18973290 ~ 18973588 (-) True G2113479
XM_021589380.2 mRNA downstream 20949 18864839 ~ 18879323 (-) True LOC110508671
XM_021589378.2 mRNA downstream 51133 18838313 ~ 18849139 (-) True LOC110508670
XM_021589379.2 mRNA downstream 51164 18838313 ~ 18849108 (-) False LOC110508670
XM_021589368.2 mRNA downstream 383075 18484345 ~ 18517197 (-) True LOC110508666
XM_036967043.1 mRNA downstream 418939 18428824 ~ 18481333 (-) True LOC110508665
XM_021589382.2 mRNA upstream 18235 18945248 ~ 18947188 (-) True LOC110508673
XR_005040223.1 mRNA upstream 31157 18958170 ~ 18965727 (-) False LOC118944847
XM_021589386.2 mRNA upstream 88128 19015141 ~ 19025982 (-) True LOC110508676
XM_036967111.1 mRNA upstream 100355 19027368 ~ 19028856 (-) True LOC118944890
XM_021588613.2 mRNA upstream 102286 19029299 ~ 19067614 (-) True LOC110508177
TU2416687 other downstream 114950 18784897 ~ 18785322 (-) True G2113320
TU2416653 other downstream 157988 18741918 ~ 18742284 (-) True G2113287
TU2416574 other downstream 240544 18657553 ~ 18659728 (-) True G2113211
TU2416270 other downstream 400306 18499541 ~ 18499966 (-) True G2112922
TU2416252 other downstream 438734 18461174 ~ 18461538 (-) True G2112905
TU2416848 other upstream 31031 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other upstream 31097 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other upstream 31097 18958110 ~ 18959832 (-) True LOC118944847
TU2416904 other upstream 80219 19007232 ~ 19009665 (-) False G2113520
TU2416913 other upstream 80219 19007232 ~ 19008497 (-) False G2113520

Expression Profile