RNA id: XM_021589382.2


Basic Information

Item Value
RNA id XM_021589382.2
length 1678
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110508673
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18945248 ~ 18947188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAGCAACAACTCTCACACACAAAGATTCAACCTACTAGCGCTGACACACGAACAGAAAAACTACTTTCTTTCTGACAATCACATCAGCACCCAGAAAGGTCACATTGGTTAAGAGACTGACAACCATGGGGGAGTATGAAGACGTCTTGGCTTTTTTGAATGAGGACAATTATATAGATTATAACGACTCTGTAGACCCCAGCTATGTCATGAATGATATTGTGAAACTGTGTGGTAAAACTGAGGTAAACAGATTTGGAGCCAAGTTCATCCCAACATTCTACACCATCAATTTCCTGCTGAGTGTGGTTGGGAATGGGCTGGTTCTATGCATTATCTACAAATACGAGAAGCTCACTTCCGTCACCAACATCTTCCTCCTTAACCTGGTCATCTCTGACCTGCTCTTTGCGTCCAGTTTGCCCTTCTGGGCCACTTACCACTCCTCTGAGTGGATCTTTGGCCCATACATGTGCAAGCTGGTGGGCAGCGTGTACTTCATCGGattctacagctccatcctcttcctcactctcATGACCTTTGACCGATACCTGGCTGTGGTCCATGCCATTAACGCTGCCAAACGGAGGAGGAAGATCTACGCCTGCGTCTCCTCGGCAGTTGTGTGGTGTATCAGCCTTCTGGCCAGCGTCAAGGAGTTAGTTCTGTACAACGTCTGGAAGGATTCTCAATCCGAACACTTTTGTAAGGAGACAGGCTTCTCCAAGGAGATCATGAACAAATGGAAGCTGGTGGGCTACTATCAGCAGTTTGTTATCTTCTTTCTACTTCCTTTGGCCATGGTTATGTACTGCTATGTTAGAATCACAGTCCGAATCATGTCAACCCGGATGAGAGAGAAGTGTAGGGCAGTCAAGCTGATTTTTGTGATTGTATTTGCATTTTTCGTGTGCTGGACCCCATACAATATTGTGATACTGCTGAGAGCCCTCCAGATCTCCAACAGTCATAGTTCTGAGGAATGCTCTGATGTGCTTGACTACGCTCTGTATGTGACTAGGAATATAGCATACCTCTACTGTTGTGTAAGCCCTGTTTTCTACACGTTTGTTGGGAAAAAGTTTCAAAGCCACTTTAGGAAACTACTTGCAAAGCATTTCCCATGTCTGAAGAGTCATAACCACACTAGCCATAGTAGCCAAAGTAGAACAACTTCTCAGAAAAGCCCACATACCATGTATGAATACTAGAGAGGAACTGGTCTTTAAACCATTACTGATGTAAATTGTGAATAAGGTATATACTTTTGAGGGTTTTATGTTTACTATCTCAAAGAATTTCTCAATCATAGCAATACaatttgaacatgtaatttctaTTCTGTGTAATTTTGCTTCGGACTTTATTTATTCAACATTTTTTGCTAAACTGTAAATTACCAAAAGATACAAATGATGTTTGAAATATTTGAATCAATGTCTGCACGCAGGactcgctttggataaaagcgtctgctaaatggcttatATTATAATTGTTTTTACAAGAAGGTGTACATTTTATTTGCTTCAGGAGCTTGAGCTGTTTCtttccttgtttttttaaacaatcaTTTTTATTGGATCACATCAGAGCAACACAATcgataaataagaataaaaaagTCCCCTTTTTGAACAACTCCCTCTACTATCTTTGCATTAAATTGTTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416837 lncRNA downstream 4002 18940813 ~ 18941246 (-) True G2113461
TU2416800 lncRNA downstream 9124 18935904 ~ 18936124 (-) True G2113424
TU2416792 lncRNA downstream 12735 18932290 ~ 18932513 (-) True G2113418
TU2416790 lncRNA downstream 14342 18930504 ~ 18930906 (-) True G2113416
TU2416709 lncRNA downstream 137498 18807499 ~ 18807750 (-) True G2113342
TU2416859 lncRNA upstream 26102 18973290 ~ 18973588 (-) True G2113479
TU2416862 lncRNA upstream 29298 18976486 ~ 18976771 (-) True G2113482
TU2416863 lncRNA upstream 30877 18978065 ~ 18978479 (-) True G2113483
TU2416864 lncRNA upstream 33278 18980466 ~ 18980751 (-) True G2113484
TU2416841 lncRNA upstream 34889 18982077 ~ 18982376 (-) True G2113465
XM_036966605.1 mRNA downstream 18235 18900272 ~ 18927013 (-) True LOC110508176
XM_036966604.1 mRNA downstream 18239 18880690 ~ 18927009 (-) False LOC110508176
XM_021589380.2 mRNA downstream 65925 18864839 ~ 18879323 (-) True LOC110508671
XM_021589378.2 mRNA downstream 96109 18838313 ~ 18849139 (-) True LOC110508670
XM_021589379.2 mRNA downstream 96140 18838313 ~ 18849108 (-) False LOC110508670
XR_005040223.1 mRNA upstream 10982 18958170 ~ 18965727 (-) False LOC118944847
XM_021589386.2 mRNA upstream 67953 19015141 ~ 19025982 (-) True LOC110508676
XM_036967111.1 mRNA upstream 80180 19027368 ~ 19028856 (-) True LOC118944890
XM_021588613.2 mRNA upstream 82111 19029299 ~ 19067614 (-) True LOC110508177
LOC110508178 mRNA upstream 121847 19069035 ~ 19070878 (-) True LOC110508178
TU2416687 other downstream 159926 18784897 ~ 18785322 (-) True G2113320
TU2416653 other downstream 202964 18741918 ~ 18742284 (-) True G2113287
TU2416574 other downstream 285520 18657553 ~ 18659728 (-) True G2113211
TU2416270 other downstream 445282 18499541 ~ 18499966 (-) True G2112922
TU2416252 other downstream 483710 18461174 ~ 18461538 (-) True G2112905
TU2416848 other upstream 10856 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other upstream 10922 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other upstream 10922 18958110 ~ 18959832 (-) True LOC118944847
TU2416904 other upstream 60044 19007232 ~ 19009665 (-) False G2113520
TU2416913 other upstream 60044 19007232 ~ 19008497 (-) False G2113520

Expression Profile