RNA id: XM_021589386.2


Basic Information

Item Value
RNA id XM_021589386.2
length 3233
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110508676
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19015141 ~ 19025982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATCAGTTTCTCACTCTGACGAGCTTGTAGTTATAACAAGTTCAACTACCTAAGACATTGTCTCGAATCTATATTGGGCATTCATATTTTGAAAAAATTAACAACTAAGGAAGAATTGTTCACTTATCTCATTGACTTCTTATACCCCAAACCCCGACCAGGTCTGTTTCCCAACGTTCCCGGAAGTCTTGCGATGTTatgcctctgggtttagaaactgtgTTGCAGCTAATGACTTCTGTTTATAGAAATCAACGGTAACATAAAATACAGTTGTGAGAAATTGCATACTCTTTCAAAAGTCGCGCACACATGATGCTCTCAAGCGCGCTGTGTCAGCTGCTACTGGGGCGGCGCACGAGAAAGGTCAACCAGGAACTGAACCACGAGAAGCAGTGTTGGAATTTAAATTAGATCATTTGAACGACAGTTTACCTATTCAAACGTATTATTAGAGTTGACCCAGCTTGGcgttgttgtcatggaggagacgAACAGGGAGGCTGTCGCTACCGCGGTGCAGAGGGTGGCTGGGATGCTGCAGCGCTCGGACCAGTTGGACAAAGTAGAGCAGTACCGCCGGCGAGAGGCTCGCAAGAAAGCTTCAGTAGAAGCCCGACTGAAGgCTGCCATCCAGTCCCAGTTGGACGGGGTCCGCACAGGGCTCAGTCAGCTCCATAATGCCCTGCGGGATGTCAAGGACATACAGAACTCCCTGGCAGACGTCAGTAAGGACTGGAGGCAGAGTATTAACACGATTGAGAACCTCAAAGATGTGAAAGACGCCGTTGTCCAGCACAGTCAGCTTGCCTCAGCTGTCGAGAATTTAAAGAATATCTTCTCAGTGCCTGAGATAGTGGCAGACACCCAGGTGCTGATTGAGCAGGCTGAGCTGCTGGAGGCCCACCGTAAACTGATGGATCTGGAATGCTCGCGGGACGACCTCATGTATGAGCAGTACCGAATGGACAGCAAAAACACTCACGACATGAACCTGATCCGCAACTACTTTGGCGCGGTGCAGGGCCTGTCTGACGACCTGGCCAAGCAGCTGTGGATGGTGCTGCAGCGCGCCATGGGCACGGTGCGCCGCGACCCCACCATGCTGGTTTCCGTGGTGCGCATCATTGAGCGTGAGGAGAAGATTGACCGGCGCATGCTGGACCGCAAGAAGCAGATGGGCTTTATCCCCCCAAGTCGGCCCAAGAGCTGGAAAGAGAAGATGTTTGAGGTGCTGGAGGGCACGGTCACCACACGCATCGAGGGCAGCCAGTCGGTGACGCGAGAGGCAGACAAGATGTGGATGGTGAGGCTCTTGGAGATCACCAGGAAGTACGTGCTGGACGACCTGATTGTGGTGAAGAACCTGATGGTGCAGTGCTTCCCGCCACACTACAACACCTTTGACAGGTTTTTAAAGCTGTACCACAACGCCGTGTCCATGCGGGTGCAGGAGCTGGCTGCAGAAGACCTGGAGGCCAACGAGATCGTGTCCCTCCTCACCTGGGTCCTCAACACATACAAAAGtGTGGAGATGATGGGTCACCCAGATCTGGTGACAGAGTATGACATCCACCTGATGGATCCTCTGCTACCTCAGAAGGTGGTGGATGAGCTTCTCAGCAAATACGTCCAGACCTTCACTTCTAACATCACTGGCTGGCTTCGCAAGGCTCTGGAGACAGACAAGAAGGACTGGTTTAAAGAGACAGAACCAGAGGCGGATCAAGATGGATACTACCAGACCACCCTCCCTGCCATCGTCTTCCAAATGTTTGAGCAGAATCTCCAAGTGGCAGCCCAGATCGACGAGACCTTCAAAGAGGAGGTCCTGAAGCTCTgtttaaaacaaatgaattcattCCTCATCAGATACAGGGAAGAGGCGATCGCCTACAAGGAGGACCACTTGAGAGACCGGCAGCTCCCTCAGTGCTACGTCCAATACATGATCGCCATTATAAACAACTGTCATACATTCAAGGAGTCTATTAACAGTCTAAAGAAGAAATACTTAAAATGTACGGAGCCCACCCAGAATGATGCTGCCATCGAGAGGACCCTGAACGATGTGGCCAAAGATGGATGCCAGTTTCTACTGGATGAAGTTTTCCTGGATTTGGAGCATCATCTCAGTGAGTTGCTGACCCGGAAGTGGTTGACGGGGACCCATGCAGTGGACACCATCTGTGTGACCGTCGAGGATTACTTCAACGACTTCGCCAAGATCAAGAAGCCTTTCAATACGGAGATGACCAGCGAGGCTCATCGCAGGGTGGTGGTGGAGTATATCAAGGCAGTGATGCAGAAACGGATCACCTTCAAGAACgcagatgagaggagggagggagcggaCAGGATGATTAAAGAGGCTGAGCAGTTCAAGTTCCTCTTCAGGAAACTCACTGCTGGTGAGGAGACTGATCGGCTGTGCGACGCCATCGCTGCTATAGCTGAGGTGTTTAAACTCACAGACCCCACCCTGCTTTACCTGGAGGTCTCCACGCTGGTGTCCAAATACCCTGACATCAGGGAAGAGCACATCGTGGCCTTACTAGCGGTGAGAGGGGACGCTAGCCGAGAAATGAAGCAGATGATCATTGAGACGCTGAACCAGAACAAGCCTTCCTATGCCGGCAACACCCAGCCCATCTTCAAGGACATCACGATCCCCACCGTGACCATGACCTCCATGTCCTCCTCTATGGCCGCCACTGCCAACAAACTGCTGAAATAAATAACTAGattctggagagagatggagacacctGGGTCCTATTCATTAATGCATTATTCATTAATGCACAAGGTTCAATTGTTCATTattgcagggtttcccaaactcggtcctgggaaACTCTGCCTTATTGGACACGTTTggatagtccctccctgttttagtGCCTAGTGATTACGACCCCggcacaaaaaaaacacacttcAAAAAATCAtgatttttcttttcttttgcaCTTTTGAAACCTATTCCACAGACCTCCGATGAAAGGCTTGGACTGTAGTCCTTGAGGATCTGTAAGCGTATGATACTTGATGAATGAACCATCAAACACTACCAAGTGGTTTTGTTACTGAAATAAGACCTTGCTCACACCACCCACCCTCCTTGCTTGCCTTATACAATTAACAGTTTGAAATTGTTTCTTAAACTTTTTCAGTGTGTGATGCTGAATGTCTGTCAGAAAATCTATTAAAGAAATCCTTTCCCCTGTC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
K06110 EXOC3, SEC6; exocyst complex component 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416907 lncRNA downstream 3506 19009732 ~ 19011635 (-) False G2113520
TU2416903 lncRNA downstream 3904 19009294 ~ 19011237 (-) False G2113520
TU2416905 lncRNA downstream 3904 19009732 ~ 19011237 (-) False G2113520
TU2416910 lncRNA downstream 3904 19009792 ~ 19011237 (-) False G2113520
TU2416909 lncRNA downstream 3904 19009884 ~ 19011237 (-) True G2113520
TU2417201 lncRNA upstream 380 19026362 ~ 19027287 (-) True G2113770
TU2417212 lncRNA upstream 10710 19036692 ~ 19037180 (-) True G2113781
TU2417213 lncRNA upstream 12053 19038035 ~ 19038270 (-) True G2113782
TU2417218 lncRNA upstream 18472 19044454 ~ 19045152 (-) True G2113787
TU2417200 lncRNA upstream 24490 19050472 ~ 19051048 (-) True G2113769
XR_005040223.1 mRNA downstream 49414 18958170 ~ 18965727 (-) False LOC118944847
XM_021589382.2 mRNA downstream 67953 18945248 ~ 18947188 (-) True LOC110508673
XM_036966605.1 mRNA downstream 88128 18900272 ~ 18927013 (-) True LOC110508176
XM_036966604.1 mRNA downstream 88132 18880690 ~ 18927009 (-) False LOC110508176
XM_021589380.2 mRNA downstream 135818 18864839 ~ 18879323 (-) True LOC110508671
XM_036967111.1 mRNA upstream 1386 19027368 ~ 19028856 (-) True LOC118944890
XM_021588613.2 mRNA upstream 3317 19029299 ~ 19067614 (-) True LOC110508177
LOC110508178 mRNA upstream 43053 19069035 ~ 19070878 (-) True LOC110508178
XM_021589387.2 mRNA upstream 55556 19081538 ~ 19095065 (-) True LOC110508677
XM_021589388.2 mRNA upstream 90100 19116082 ~ 19185326 (-) False LOC110508678
TU2416904 other downstream 5476 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 6644 19007232 ~ 19008497 (-) False G2113520
TU2416848 other downstream 48662 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other downstream 48662 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other downstream 55309 18958110 ~ 18959832 (-) True LOC118944847
TU2417253 other upstream 90108 19116090 ~ 19122056 (-) True LOC110508678
TU2419508 other upstream 1833158 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2844703 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2847234 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2916999 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile