RNA id: LOC110508178



Basic Information


Item Value
RNA id LOC110508178
length 700
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110508178
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19069035 ~ 19070878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGCAGCTGCCAACCCCATCGATGGGAGATACAACCACTTTAAGTCTCTGAAACAGAACGTCAACATGTCAGAACACATCATTTTCAGATTTGACCTCTTCGTCAATTTGATTGATGAGTGCAATGAGGTCAAGGAGTTGACGCACAAGCATCTGTGTCAGAGTGACAGCACCAAGCCAGCCTGGTGTATCATTGTCAGGCAGCTAGATAGCATGCTCCGACTGTCTGAGGGCATGGCCAGGCTCTACCGCTCAGATAATGACTTGATAGATGAGGCTGTGAAGGGGAGAAACGGCACTAATGGCCATCATGCAGAGGAGGCTATGGACATAGACCATGGGGCAGGCAGACCTGAGAAAAACAGCACTGCCAAGCCTGCTCTCAAAATGACCTTCGCTGAGTATTGGAGTGTCTCCAACCTCATCATTCTGCACATGCACAAGATGGATGATATTGACGAAGAGTCCTCACTGAAGAAGAGAAAGCTGATTTAACTGGTACCTGAAAGAGATGAAGAGTGAGATCGAGTCAGAAGCTGAGATGGTTGCCAAGAAGTATCTGATTGAGAAAGTGCTTCAGAGACGAATCCATTATGACCACATCATCATAGAGTTAACGAAGACTGGGCTGAAGAAAGTTGGTGTTGAGGGAGAGGACCCCTTCTTAGTGGTCAATGGCAATTACATCCTGGAAAACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2417234 lncRNA downstream 4747 19063997 ~ 19064288 (-) True G2113802
TU2417224 lncRNA downstream 11938 19056632 ~ 19057097 (-) True G2113793
TU2417200 lncRNA downstream 17987 19050472 ~ 19051048 (-) True G2113769
TU2417218 lncRNA downstream 23883 19044454 ~ 19045152 (-) True G2113787
TU2417213 lncRNA downstream 30765 19038035 ~ 19038270 (-) True G2113782
TU2417256 lncRNA upstream 34409 19105287 ~ 19105610 (-) True G2113823
TU2417266 lncRNA upstream 122930 19193808 ~ 19197058 (-) True sc61g
TU2417304 lncRNA upstream 133179 19204057 ~ 19204256 (-) True G2113871
TU2417305 lncRNA upstream 133966 19204844 ~ 19205108 (-) True G2113872
TU2417306 lncRNA upstream 134311 19205189 ~ 19205400 (-) True G2113873
XM_021588613.2 mRNA downstream 1421 19029299 ~ 19067614 (-) True LOC110508177
XM_036967111.1 mRNA downstream 40179 19027368 ~ 19028856 (-) True LOC118944890
XM_021589386.2 mRNA downstream 43053 19015141 ~ 19025982 (-) True LOC110508676
XR_005040223.1 mRNA downstream 103308 18958170 ~ 18965727 (-) False LOC118944847
XM_021589382.2 mRNA downstream 121847 18945248 ~ 18947188 (-) True LOC110508673
XM_021589387.2 mRNA upstream 10660 19081538 ~ 19095065 (-) True LOC110508677
XM_021589388.2 mRNA upstream 45204 19116082 ~ 19185326 (-) False LOC110508678
XM_021588582.2 mRNA upstream 122930 19193808 ~ 19196973 (-) False sc61g
NM_001160688.2 mRNA upstream 122933 19193811 ~ 19197044 (-) False sc61g
XR_002471344.1 mRNA upstream 138321 19209199 ~ 19211641 (-) False pkia
TU2416904 other downstream 59370 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 60538 19007232 ~ 19008497 (-) False G2113520
TU2416848 other downstream 102556 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other downstream 102556 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other downstream 109203 18958110 ~ 18959832 (-) True LOC118944847
TU2417253 other upstream 45212 19116090 ~ 19122056 (-) True LOC110508678
TU2419508 other upstream 1788262 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2799807 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2802338 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2872103 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile