RNA id: TCONS_00055392


Basic Information

Item Value
RNA id TCONS_00055392
length 390
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_028555
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10766014 ~ 10835620 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGCTTCAGGATGTTGACAGTGTGACGTTTGTTTTGGTGCAGCAGCAGCACGAGTGTGCAGTTTTAAACACATAAACTGAAGATGACAGCTCAGCGACAGTGTTTTAATGTCACTAAACAACATTTAATGCAGTCCGACAACTAAAATAACCGACACACGCTGAGATAAAGGACAGGAATGCAGTGAAAAGCGACTCATCTAGATTGAGGGATGTGTTTGGACCGTACAGTCAACAGAAGCAGAGCTCCGGGACGTTTGGACTACATTTACAGGCGTGATGGACGTCTGCTGCGGACAGTGAAATTCCAGCAGCCGTGGGATTCAAACCCGGGTCTTCAAAATACAAATCGAATGCTCTAACCACTCAACCACAGAGCTGGTCCTCACC

Function

GO:

id name namespace
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058078 lncRNA downstream 3716 10766014 ~ 10769864 (-) False XLOC_028555
TCONS_00058077 lncRNA downstream 3844 10766014 ~ 10769736 (-) False XLOC_028555
TCONS_00058076 lncRNA downstream 4076 10766014 ~ 10769504 (-) False XLOC_028555
TCONS_00058075 lncRNA downstream 20639 10748977 ~ 10752941 (-) False XLOC_028554
TCONS_00058098 lncRNA upstream 8490 10783814 ~ 10793135 (-) False XLOC_028555
TCONS_00055393 lncRNA upstream 8491 10783815 ~ 10789192 (-) False XLOC_028555
TCONS_00055394 lncRNA upstream 12126 10787450 ~ 10789132 (-) False XLOC_028555
TCONS_00058099 lncRNA upstream 13212 10788536 ~ 10793053 (-) False XLOC_028555
TCONS_00055395 lncRNA upstream 15636 10790960 ~ 10812236 (-) False XLOC_028555
TCONS_00055388 mRNA downstream 174518 10574822 ~ 10599062 (-) True XLOC_028552
TCONS_00055386 mRNA downstream 864209 9901116 ~ 9909371 (-) False XLOC_028550
TCONS_00055385 mRNA downstream 881706 9880647 ~ 9891874 (-) True XLOC_028549
TCONS_00055383 mRNA downstream 905795 9854075 ~ 9867785 (-) False XLOC_028548
TCONS_00055398 mRNA upstream 36166 10811490 ~ 10826575 (-) False XLOC_028555
TCONS_00055399 mRNA upstream 37937 10813261 ~ 10835620 (-) False XLOC_028555
TCONS_00055400 mRNA upstream 38586 10813910 ~ 10826575 (-) True XLOC_028555
TCONS_00055401 mRNA upstream 150847 10926171 ~ 10931729 (-) True XLOC_028557
TCONS_00055402 mRNA upstream 174065 10949389 ~ 10958074 (-) True XLOC_028558
TCONS_00055389 other downstream 111903 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2185672 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2632114 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 2897650 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 2897820 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 831434 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 832872 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1499790 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1638095 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1820356 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile

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