RNA id: TU2417266


Basic Information

Item Value
RNA id TU2417266
length 442
lncRNA type sense_over
GC content 0.40
exon number 4
gene id sc61g
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19193808 ~ 19197058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACGTCGACTTTTAGAACATACGTGGCCTTTACATAGAGCAGTCACATAAATAGGTCTTCAGAAGAGAACTCCGGATCAAAACCTTTCCAACATGGACCAAGTAATGCAATTTGTGGAGCCCAGCCGGCAGTTTGTGAAGGACTCAATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGaATTCTCAAAGATTGCAATGGCCACAGCAATAGGTTTTGCTATAATGGGTTTCATTGGTTTCTTTGTCAAACTCATCCACATCCCCATCAACAACATCATTGTTGGTGGTTGAATATCTCTCcggactgactgactagctgcaacaagacatgggttcaaatgccgagaagtgttttttttcttctttgtatATTATTATCTTCAGTTCATATTTGTTTGCTCTGTAAATAAATCTGGCTTAGTAAGAATTCAAA

Function

GO:

id name namespace
GO:0071806 protein transmembrane transport biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006412 translation biological_process
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2417256 lncRNA downstream 88198 19105287 ~ 19105610 (-) True G2113823
TU2417234 lncRNA downstream 129520 19063997 ~ 19064288 (-) True G2113802
TU2417224 lncRNA downstream 136711 19056632 ~ 19057097 (-) True G2113793
TU2417200 lncRNA downstream 142760 19050472 ~ 19051048 (-) True G2113769
TU2417218 lncRNA downstream 148656 19044454 ~ 19045152 (-) True G2113787
TU2417304 lncRNA upstream 6999 19204057 ~ 19204256 (-) True G2113871
TU2417305 lncRNA upstream 7786 19204844 ~ 19205108 (-) True G2113872
TU2417306 lncRNA upstream 8131 19205189 ~ 19205400 (-) True G2113873
TU2417388 lncRNA upstream 124583 19321641 ~ 19324735 (-) True G2113953
TU2417390 lncRNA upstream 129014 19326072 ~ 19326720 (-) True G2113954
XM_021589388.2 mRNA downstream 8482 19116082 ~ 19185326 (-) False LOC110508678
XM_021589387.2 mRNA downstream 98743 19081538 ~ 19095065 (-) True LOC110508677
LOC110508178 mRNA downstream 122930 19069035 ~ 19070878 (-) True LOC110508178
XM_021588613.2 mRNA downstream 126194 19029299 ~ 19067614 (-) True LOC110508177
XM_036967111.1 mRNA downstream 164952 19027368 ~ 19028856 (-) True LOC118944890
XR_002471344.1 mRNA upstream 12141 19209199 ~ 19211641 (-) False pkia
XR_002471343.1 mRNA upstream 12141 19209199 ~ 19211657 (-) False pkia
XM_036965998.1 mRNA upstream 12141 19209199 ~ 19255933 (-) True pkia
XM_021589398.2 mRNA upstream 136009 19333067 ~ 19341851 (-) True LOC110508682
XM_021589399.2 mRNA upstream 150248 19347306 ~ 19359361 (-) False LOC110508683
TU2417253 other downstream 71752 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 184143 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 185311 19007232 ~ 19008497 (-) False G2113520
TU2416848 other downstream 227329 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other downstream 227329 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 1662082 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2673627 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2676158 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2745923 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2745923 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile