RNA id: XR_002471343.1



Basic Information


Item Value
RNA id XR_002471343.1
length 1096
RNA type mRNA
GC content 0.44
exon number 3
gene id pkia
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19209199 ~ 19255933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTATTGGTCAGAGCAGCAGAAAACCTGTCAATCAAGGAATGTAATGCAACGACTGGGGTTTTACATGTATAGTATTGATGCGCGTACAATAACCGTACATCGTATGTAAAGGCAATAGGCTATAAACCGATGTGAGTAGGCTATCTAAATCCAGATATTTACCTAGAGCGTAAATAATCCTGTGGGGTTTTGTAGTTGATCCGCGTCGCGTACGGTCAATTTGATTCCTTTGTAGGCCCACTAGACTAGATTCCCTTTGTCACTCGCTCAAAAATGTGGCACGGATTTTACAGTCGTAGGATGACAGATTACTCAAGGAGTGGCTATGTGAACATGTGTCAGCGATGACCGAAGTTGAAGTGACGTATGCAGACTTCATAGCCTCCGGTAGAACTGGACGAAGGAATGCCCTGCATGATATCCTCCAAAGCCCCACTGACCCAAACGCCAGAGATCTCCCCCTGAGCCTATCTCAACTCAACATCAATCCAACCGGAGCTGACATGGAAGAAAGTCAGGAATCGTCCACAAACGCTCTGCCACAGTCAGGGCAGAAGAATCGGGGAAACTTTCAGGCCTAAACACTGAGTTGGGCCTGCACTCACCACCACAGTCTCCCAAAGTCACACAAACGATGTAgtttgttttgaaagaaaaactgTAGTCAACGGGAAATCATTAAACTATGTAGAATTCCACGCCCTTGGCTGGGTGAGACACCTGTTTTTAATATGGAGATTGGGCCAAACATCCCCGTATTTAACAATGGATTAGGGCTAAAGCCAGACTGAGGTTGGCAAATAGTGATTTAAGTAATATTTCAGGATCCATCTAACTTACTAGAGGATGCACGGAACTGCAAAGAGCATATAAAGATCGGTTATAATGGTGCTGGTTGACAGTGGGTTtccaggtagtagaaactacagGTGGACTACAGTTTGTGGTTGCTGTGGTGACTGAAAGGATTTGAGCATTTTGATCTCATACTTCCTTCAGAAACATCATCCAGACACCGccccattttttaaaattgtatatacagtatacgtCATTGATCACAGGTTTTTATTAAACAACACCACTACCTTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2417306 lncRNA downstream 3799 19205189 ~ 19205400 (-) True G2113873
TU2417305 lncRNA downstream 4091 19204844 ~ 19205108 (-) True G2113872
TU2417304 lncRNA downstream 4943 19204057 ~ 19204256 (-) True G2113871
TU2417266 lncRNA downstream 12141 19193808 ~ 19197058 (-) True sc61g
TU2417256 lncRNA downstream 103589 19105287 ~ 19105610 (-) True G2113823
TU2417388 lncRNA upstream 109984 19321641 ~ 19324735 (-) True G2113953
TU2417390 lncRNA upstream 114415 19326072 ~ 19326720 (-) True G2113954
TU2417422 lncRNA upstream 185056 19396713 ~ 19397180 (-) True G2113978
TU2417426 lncRNA upstream 191791 19403448 ~ 19403721 (-) True G2113982
TU2417432 lncRNA upstream 195464 19407121 ~ 19407379 (-) True G2113988
NM_001160688.2 mRNA downstream 12155 19193811 ~ 19197044 (-) False sc61g
XM_021588582.2 mRNA downstream 12226 19193808 ~ 19196973 (-) False sc61g
XM_021589388.2 mRNA downstream 23873 19116082 ~ 19185326 (-) False LOC110508678
XM_021589387.2 mRNA downstream 114134 19081538 ~ 19095065 (-) True LOC110508677
LOC110508178 mRNA downstream 138321 19069035 ~ 19070878 (-) True LOC110508178
XM_021589398.2 mRNA upstream 121410 19333067 ~ 19341851 (-) True LOC110508682
XM_021589399.2 mRNA upstream 135649 19347306 ~ 19359361 (-) False LOC110508683
XM_021589400.2 mRNA upstream 135649 19347306 ~ 19359854 (-) True LOC110508683
XM_021589402.2 mRNA upstream 147860 19359517 ~ 19361133 (-) True atpsckmt
XM_021589401.2 mRNA upstream 149403 19361060 ~ 19367850 (-) True LOC110508684
TU2417253 other downstream 87143 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 199534 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 200702 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 242720 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 1647483 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2659028 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2661559 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2731324 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2731324 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile