RNA id: XM_021588589.2


Basic Information

Item Value
RNA id XM_021588589.2
length 3045
RNA type mRNA
GC content 0.42
exon number 2
gene id socs6
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19391364 ~ 19394722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actatgactcatttgATCCCATTGGAAAGGACAGACAGGCTGTGGTTTATTTTAGTTATACAATTGTTTTCCTCAATCCCCGGACTGGTCTGCTTCGCAAGCGTTCCCGGTAGTCTCGCGATGTTGCATCTCCGGGTTTAGAAACTCTGACCCCATCGAATTAAGTATctattttcccacaatgcaagcGTCATGTAAACAAAGGACAACGACAGGAAGGGAGACTGAAAAGTTCTAGCTAGTTGAGTACCTAGTTACAAATGTGCAACTTGCTACAGCATTTCTGCAATGGATATACCAACAATATACATATATTTAAGTATATAACTAACCAGTTTGACATAGTTTGTATTGTTTTTCGGTTGTCTCGTGTGGGGTCTCTACTTCCAGTTAGCTTGCTACGGTAACGTTAGTTAACTTGCGTGCCTAGCAGCTAACAGTAGCTATAGTACTTTGTCTCAAAATGCATCGGTCTTGGCAGTTTCATATGGAAACAGTTTTTAAAAGAGGGTGACGGGTAATATCAAAAGTGAATCGAAGTAAAGAAGGGATGACAGCTTTTGGAGGACAACCTTTGTGGCCATCATACATCCATGAGCCTCCCCACGTCTGAGGGACTTCCACAATGAAGAAAATCTGTCTGAAAACGATACGAAAGTCATTCAACCTAAAAagcagagaggagggaaaggataTTGTACCACAGCCAAATTCAGCTACCGACATCTCAACAGATTCAGTGTTTGGAAAATGTTACAGCAAAGAACTTGTTCGCAACGACTTCAATCATGAGGAGGAGAAAGGCCCTAAGAACCGCTCCAAGGGTGAGAGTCTTATGGGATCACTGAAAAGAAGGCTTTCGGCAaagcagaaaaataaaataaaggaaAGTTCCACATCGGTGACCAGTGAAGATGACACATTCTCGTGCTCCTCAGCACCCATATTCTTTAATGATGTCAAATCACAACACCATCTAAGATCTAATAGTCACCATTATAGCCCCACGCCATGGGCCCTCAGGGCAGCAAATTCTGAGGAAACATGCATTAGGATGGATGGGaaagtgaaagctatgatacaTTCATCAGACCCAAGCCCATCTCTGAATGGCATTCTGAAAGAATTCCCAGACCCCCAGAGGGAAACGCTTTTTCAGGATTCAACCGAGAACACTAAGCCTCAGAATGGTGATTTGCATCTAGGTATTGATCATGAAAATGTACCTGCCATCATTGGACTAGCATCTCAGGACTATATACACTATGCAATGCCTATAGATGATGAACTTGACCCTGCAGAAGGTTTGGATAGTTCCTCTCCAATGCATGAGGTGCCTCAGCCTGAGCAATTCCCTCCTTTTGCAGATGAAGAGCCCATTGACCAGGAGAAGCTGATATCACCAGATATATTCATGGACCCATCGGTGAATCGACTGCTCTCTGATGCTGAATGTGCCTTGATTCAGGACTCTAGAATAgagcctcctctctcccccttgctctCTCTACCACCTGGTAGTCACATCCGAAGGAGTTTTCTAGTATATGGTGGTTCTTCTCACTCACATGGTGCAGAGAGAGTTTTGCATCATCTCAACTTTGACCCCAATTCAGCCCCTGGCGTTGGCAGGGTTTATGATGCTGTTCAGCACAGCGGGCCCATGATTGTAACCAGCCTTACAGTAGAGCTAAAGAAACTGGCCAAGCAGGGTTGGTACTGGGGTCCTATAACGCGTTGGGAAGCTGAGGAAAAACTTGCCAGCCTGCCAGATGGGTCATTCTTGGTGCGAGACAGCTCAGACGATCGCTATCTTTTGAGCTTGAGCTTTCGTTCACAGGGTAAGACCCTCCACACCAGGATTGAACACTCCAATGGTAGTTTCAGTTTCTACGAACAGCCAGATGTGGAGGGTCACATATCAATAGTGGAACTCATAGAATGTTCAATCATAGATTCTGAGAGTGGAGCCTTCTGCTATTCACGATCTCGCACACCAGGGACTGCAATGTATCCTGTCCGACTTACAAACCCTATCTCAAGGTTTATGCAGGTGCGCTCCATGCAGTACCTCTGTCGGTTTGTCATCCGTCAGTACACACGGATCGACCTTATCCAGAAGTTGCCTTTGCCAAACAAGATGAAAGATTACTTGCAGGAAAAGCACTACTGAAGGGCTTAAATTAAACTCAGTTGGACTTTCTTGCACATTTTTGATCAGTGATATATTGACTTAGTcctcatttttacattttttttttaccctttttcTTGGCTGTTACAAATACTTTTTGTGAATTTGATTTCAATACATGTAACACAGTACAATGTCTCCCTATCTAGTGATCTGTTCAACAGCCAATGCCAacaactgatatatatatatagagcatACAGTTATACTCCCAACCTCAAAGCAAAGGATTGAAATTGAACCGTAATCAAATCTATATTTAAGAAATTAGCATTGGATTATTTCTTTTAATTGTGTTTTGATGAGCCAAGTGTTTTGTTATATAAAGCACAAATGGTTCTAATCGTTACTACACTCCACATTTCTGCATTGTCCTATGTGGTTTGTTGTCTTACATTAAACCAGTTTGTTAGTactgtagctactagctagtatgAGTTTGATACCTGAAAGTTCTCTCTGCTCAGTCTTTAGTAAAGTTGTTTTTCTTTTGCTTCAGTGATGGTTTCTCATTGCATGTTAATTATATTGCGTATATGGAGAATGAAAATTTAAGTACAACACATCTGATGCTGTAATTTGGGAGAACTAATCGTCATCGACTGTATAGGCATAAATCGAGATAATGGCTTGTTTGTGCAGCCTAAACTTGACTGTTTGCCTGTCACTGTAAGTATAAGGATAAAATGCCTCACCTTGTTACTTTTCAGGTCATGAAATGCTACCTACTTGTTTTGGTAtgtctcacccctccctccctcttgaaAGGCTGTACTTCAATTTATTGCACATCTTCAATGCAGTTAAAGGAGGGGTGTTTATGATTGTTAATAAACTGCATTCACATataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2417390 lncRNA downstream 64644 19326072 ~ 19326720 (-) True G2113954
TU2417388 lncRNA downstream 66629 19321641 ~ 19324735 (-) True G2113953
TU2417306 lncRNA downstream 185964 19205189 ~ 19205400 (-) True G2113873
TU2417305 lncRNA downstream 186256 19204844 ~ 19205108 (-) True G2113872
TU2417304 lncRNA downstream 187108 19204057 ~ 19204256 (-) True G2113871
TU2417422 lncRNA upstream 1991 19396713 ~ 19397180 (-) True G2113978
TU2417426 lncRNA upstream 8726 19403448 ~ 19403721 (-) True G2113982
TU2417432 lncRNA upstream 12399 19407121 ~ 19407379 (-) True G2113988
TU2418253 lncRNA upstream 79145 19473867 ~ 19474185 (-) True G2114754
TU2418256 lncRNA upstream 81109 19475831 ~ 19476031 (-) True G2114757
XM_021589401.2 mRNA downstream 23514 19361060 ~ 19367850 (-) True LOC110508684
XM_021589402.2 mRNA downstream 30231 19359517 ~ 19361133 (-) True atpsckmt
XM_021589400.2 mRNA downstream 31510 19347306 ~ 19359854 (-) True LOC110508683
XM_021589399.2 mRNA downstream 32003 19347306 ~ 19359361 (-) False LOC110508683
XM_021589398.2 mRNA downstream 49513 19333067 ~ 19341851 (-) True LOC110508682
XM_021589404.2 mRNA upstream 20982 19415704 ~ 19426298 (-) False crispld1b
XM_021589405.2 mRNA upstream 20982 19415704 ~ 19426343 (-) True crispld1b
XM_021589409.2 mRNA upstream 75113 19469835 ~ 19472417 (-) True tmem70
XM_021589411.2 mRNA upstream 90228 19484950 ~ 19488548 (-) True LOC110508691
XM_021589412.2 mRNA upstream 95999 19490721 ~ 19517290 (-) True LOC110508692
TU2417253 other downstream 269308 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 381699 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 382867 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 424885 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 1464418 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2475963 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2478494 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2548259 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2548259 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile