RNA id: XM_021589404.2


Basic Information

Item Value
RNA id XM_021589404.2
length 2347
RNA type mRNA
GC content 0.43
exon number 15
gene id crispld1b
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19415704 ~ 19426343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATCCAAATTTGGCATATAAATGCAGGGAGCGCTCGTATTTGAGATATGATACAGGTAACTCTAGACTTTTTGTTGGATGTATGATACTTTACCCGTACGAAAGTTTTGGCTCCTGTTATGAGAGATGTCATAAATCTTAGGATGTATGAAGAGTAGCTTTCATTCGGCTGCAATAAAACTTTTGGAGTTGGACATTGTTTCCTGAGGATAGTTGACCAGATTAAACAACAGTGTTCGGTAAAAGCCAACAGAATACAGATTTGTGTATTGGAGGCTTGAGAGGCTGATCAGTCATCATGAAGTGTGGAACTCAGGACTGGCTACGAGGGTTTGGGCTGCTATTCTTTGTGCAAACAGTACTTTCTATGGTGATCCCTAACTCTACTCACCTGGAGTTGTTACTGGAGAAGTATATGAACAAAGATGATGAGTGGTGGGTGTCCAAACAGCGAGGGAAGAGAGCCATCACTGAGGGTGATATGCACCTCATACTTGATTTGCACAACAACCTGAGAGGTCAAGTTTATCCTCAAGCTTCAAATATGGAATATATGGTTTGGGATACAGATCTGGAGAGGAGTGCCGAGCACTGGGCACACACCTGCCTGTGGGAGCATGGACCACAACACATGCTAACTCAGATTGGACAAAACCTGGGTGCACACTGGGGAAGAGACCGACCACCAACATTTCACGTCCAGGCCTGGTATGATGAAGTGAGAGACTACAGCTATCCCTATCCACAGGAGTGTAACCCACACTGCCCCTTCAGATGCTCTGGTCCTGTCTGCACTCACTACACACAGATGGTTTGGGCAACAAGCAGCCATATTGGATGTGCTATTAATATATGCTACAACATGAATGTGTGGGGCATGATTTGGACTAAAGCTGTGTACTTGGTTTGCAACTACTCACCGCCGGGAAACTGGTGGGGGCATGCCCCATACAAACATGGCAGCCCGTGCTCTGCCTGTCCGCCCAGCTACGGTGGAGGCTGTAGGGATAATCTCTGCTATACAGAGAACGGATTAGATCGACGTCCTGCCCCTGAACTAGAGGAGACAAACTACATCGAGCCAGAGCCGAGGGCCCAAGAGCCAAGGTCGAGACCGCAACCCCCAATACCATCACCCAATGACAACATGGAGAGGAATGAGGTGGTCAGCACAGTGCAAATGTGTCAACAGATGGACTGTGAGACAAAGCTGCGTGATCGTTGTAAAGAAACCACTTGTAATAGGTACGAGTGTCCTCCTGGATGCTTGTCCAGCCCAGGAAAAGTCATAGGGACTGCGTATTATGATATGCAATCAAGTGTTTGTGGAGCTGGTTTACATGCTGGAGTAATAGACAACGATGGAGGCTGGCTGGATGTTACAAGACAAGGAAGAAAACCACATTTCACAAAGTCATACAAAAATGGAATTCAGTCTCTTGGGATGAACAGGAGTGCAAATGCTTTCAAAGTATTCTCTGTACCAGTAAAGGCAGTACCGTGTGGGACCACTGTTGCACGGTTCTGTCCCTACAAAAGACCTGTACGGCACTGTCCAAGGTTGTATTGCCCCCGCAATTGTCTGCATGAGACCCGTGCCAGAGTCATTGGAACACAATATTATTCGGATAAATCCAGTATATGTCGAGCAGCCATCCATGCTGGTGTCATTCAGAATGACTCAGGAGGCTACTTGGATGTGCAACCCGTGGacaagaggagacagtacagCGGTAGCTATCAGAATGGAATCTCTTCAGAAAGCCTACAGAATCCCTCAGGTGGCAAAGCATTCAGAGTATTTGCAGTCATTTGAATTCACATTGCAAGGACACTGGCAATGAAAAAGAGCACTTGTCATTTCACAGCCAGTAATCACATTACTTGTGGTTTCCTTCTCTTGCCAAGCTGAACAACCTATAAAAGATATACATTTAAACAGTGTATCTTTAAGCTTGTTTATTTGATGTATATAATATGTTGTAAATAagtttaatgtaaaaaaaatataaataaattaaaaaaaatatttgtatcagaacagaaaaatatatacagtaatgAGCATGCATAGTAAATGTTTTCATTCTATGATatttaaaatgtattgtttttatttgattttgtatgcatattttttttaactattaTGTTTTGATGGCTGTTGTATTTTTCCTGATGCAAAATATATAGTATAGTCTTTATTCATAGATTTTTACAGTTCAAGCCTGGCTGGCCAGGAGTGTGTCAGAAAATGTCATAGCCTGAACCGAAAAGGGTGAGACAGCCGAAATATgcattatttatttacatttatgAATAAATCAATGGTAAATTCTGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2417432 lncRNA downstream 8325 19407121 ~ 19407379 (-) True G2113988
TU2417426 lncRNA downstream 11983 19403448 ~ 19403721 (-) True G2113982
TU2417422 lncRNA downstream 18524 19396713 ~ 19397180 (-) True G2113978
TU2417390 lncRNA downstream 88984 19326072 ~ 19326720 (-) True G2113954
TU2417388 lncRNA downstream 90969 19321641 ~ 19324735 (-) True G2113953
TU2418253 lncRNA upstream 47569 19473867 ~ 19474185 (-) True G2114754
TU2418256 lncRNA upstream 49533 19475831 ~ 19476031 (-) True G2114757
TU2418228 lncRNA upstream 63515 19489813 ~ 19490442 (-) True G2114741
TU2418295 lncRNA upstream 110162 19536460 ~ 19536921 (-) True G2114795
TU2418297 lncRNA upstream 110666 19536964 ~ 19537636 (-) False G2114796
XM_021588589.2 mRNA downstream 20982 19391364 ~ 19394722 (-) False socs6
XM_021588590.2 mRNA downstream 20983 19391364 ~ 19394721 (-) False socs6
XM_036965883.1 mRNA downstream 20983 19391364 ~ 19394721 (-) False socs6
NM_001195173.1 mRNA downstream 21157 19391718 ~ 19394547 (-) True socs6
XM_021589401.2 mRNA downstream 47854 19361060 ~ 19367850 (-) True LOC110508684
XM_021589409.2 mRNA upstream 43537 19469835 ~ 19472417 (-) True tmem70
XM_021589411.2 mRNA upstream 58652 19484950 ~ 19488548 (-) True LOC110508691
XM_021589412.2 mRNA upstream 64423 19490721 ~ 19517290 (-) True LOC110508692
XM_021589413.2 mRNA upstream 115614 19541912 ~ 19558555 (-) False LOC110508693
XM_021589414.2 mRNA upstream 118535 19544833 ~ 19558553 (-) True LOC110508693
TU2417253 other downstream 293648 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 406039 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 407207 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 449225 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 1432842 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2444387 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2446918 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2516683 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2516683 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile