RNA id: TCONS_00058097


Basic Information

Item Value
RNA id TCONS_00058097
length 268
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id XLOC_028555
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10766014 ~ 10835620 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCCACTCCACTAGGCGGCAGAAGCAATGCTCAGCTCGACTCAACACGAATCAGGTGGGAAGACGTAGAACTTCAGATGACAGCAGCACGCTCGTCATGACAACAGAATGAGGGATGTGTTTGGACCGTACAGTCAACAGAAGCAGAGCTCCGGGACGTTTGGACTACATTTACTGGCGTGATGGACGTCTGCTGCGGACAGAGATTGAGGGATGTGTTTGGACCGTACAGTCAACAGAAGCAGAGCTCCGGGACGTTTGGACTACA

Function

GO:

id name namespace
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058078 lncRNA downstream 4748 10766014 ~ 10769864 (-) False XLOC_028555
TCONS_00058077 lncRNA downstream 4876 10766014 ~ 10769736 (-) False XLOC_028555
TCONS_00058076 lncRNA downstream 5108 10766014 ~ 10769504 (-) False XLOC_028555
TCONS_00058075 lncRNA downstream 21671 10748977 ~ 10752941 (-) False XLOC_028554
TCONS_00055397 lncRNA upstream 644 10793666 ~ 10796962 (-) False XLOC_028555
TCONS_00058100 lncRNA upstream 644 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055415 lncRNA upstream 331591 11124613 ~ 11125166 (-) False XLOC_028568
TCONS_00055416 lncRNA upstream 331591 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00055421 lncRNA upstream 386487 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055388 mRNA downstream 175550 10574822 ~ 10599062 (-) True XLOC_028552
TCONS_00055386 mRNA downstream 865241 9901116 ~ 9909371 (-) False XLOC_028550
TCONS_00055385 mRNA downstream 882738 9880647 ~ 9891874 (-) True XLOC_028549
TCONS_00055383 mRNA downstream 906827 9854075 ~ 9867785 (-) False XLOC_028548
TCONS_00055398 mRNA upstream 18468 10811490 ~ 10826575 (-) False XLOC_028555
TCONS_00055399 mRNA upstream 20239 10813261 ~ 10835620 (-) False XLOC_028555
TCONS_00055400 mRNA upstream 20888 10813910 ~ 10826575 (-) True XLOC_028555
TCONS_00055401 mRNA upstream 133149 10926171 ~ 10931729 (-) True XLOC_028557
TCONS_00055402 mRNA upstream 156367 10949389 ~ 10958074 (-) True XLOC_028558
TCONS_00055389 other downstream 112935 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2186704 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2633146 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 2898682 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 2898852 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 813736 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 815174 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1482092 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1620397 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1802658 12595680 ~ 12595804 (-) True XLOC_028597