RNA id: XM_036966360.1


Basic Information

Item Value
RNA id XM_036966360.1
length 6021
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110508698
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19672331 ~ 19724429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCGCGGCAGAGTGCACACGTGGAATCGACTCTCAGCTGATGAACCACAGTCTATCTAACTAAGGAGCTGGGCTTTAtcttaaaatacatttttcttgTAGGCGACAGACAGCTCAGCTTTCGTGTCCAGTCAATACTTGACACTCACCCGGAGAGTTTGATTACCAACTGAATTGACTGACTGACagaagtgtgtgagagaggagcAAGCCGGAGGGATATACAAGACGCCCTGGAGTATCTGACCGGTGGAAAGATGACATCCAAGTCATCCAGGCAGGGCAGACCCTCCTCGGCAGGGTCCAAGCAGCCCTCTCAGAGGAAGGATTGCCCGGCAGGTAATCGCTCCTGTATGCTGCGGGTCGGGGAGAGGCTTATGAGGGCTGGGAGTGAGGGGAACCTACATGCTGTGAGACCCAAACCCGCCCAGCAGACACCACTGGAGGGGGGACACCAAAAGTCCGGCTCCATCACAGCCAAAGAGTCAGGAAACAACAACCCAAGACTGTCATCACCTGAGGATGTAAAGCGCCTCCACAGACATCAGAACCTAGAGAACCAGAACCACCACTCTGAGCCACACTCCCCTAGCACTGTCCCCAGGAGGTACACCATTGGAGGGCAAGGGCACCGCAGCACCAGGGACCCCCTGACCATGCAGCACGCTGAcatagagaggaagaaagaggtgtTCCTGGAGCACCTGAAGCAGAGGTATCCTCACCATGCTGCTGTCATCATGGGCCATCAGGACCACCTCATGGGCCATCAGGACCGCCTCAGAGATGTCAGGAGCCCCCCGCACTCTGTCAGCCCCCCGCCCGGTGTAGGGGAGCAACTGGAGCACCTCTCCGTGGTCTCTCTGGAGTCTAAGGAGACCATGTCAgagggagagggtcctgctgCCTTCACCCGGGGCTGTCGGGCACGGGCCAGCCTGCCGGTGGTCCACTCTGCCAACCAGACCAGGGACAGATCACTAGgTGTGCTGTACCTGCAGTACGCAGAGGAGACCAAGCAGATCCGGATGCCCAATGAAATCACCAGTGGAGACACCGTCAGGGCTCTGTTTGTGAGTGCCTTCCCCCATCAGCTCACCATAAAGATGCTGGAGTCTCCCAGTGTGGCCGTCTACATCAAGGATGACACAAGAAATATATACTACGAGCTAACTGATGTCAGAAATATCACACCTGGCTGCTGTCTGAAGGTGTACCACAAAGACCCTGCACACGCCTTCAATCGCAGCAACGCAAGGTCCAACAATGCCGACGGCAGGATACCAAGAGAGATACTGTATGGAAGTCATAGCCCTGTCCACACTTTACAATCCACCCGCATTCCTGTCCACGCCATTCAGGGGTCCATGTCTCCCCCCATGGCCCGCTCCatgccctcctccccctccaggaTCCCCTATGGTCACCAGGCTGGGGGAGGGGTGCCAGGCAGTGCCACCCTCCCCAGGGCCAGCATGTCCAGCGGGCCACCCAGCAGGTCTGTCACCCCCTGCCCCAGCGCCATCCTGGAGAGAAGAGATGTCAAACCTGATGAGGACCTGAGCAGTAAGAGTATGGCGCTGGTGCGTGCCGACGGGTTGTATGTCAACGTCACTGACCCCTACGCTGTCCAGGAGGGCCGGCTGAGTATCGCCTCCTCACAGGGGGGCAGCCACACGGGGGACGTGGTCGACATGGGTGGTGGCCTCCTCTGGGCTTCGGGCAAGTCCACAGCCTCCTATTCAGAGAACCCAGAGCAGCAGCACTCCCTCTACAGGCAGAAGTGCCGGAGGTATGGTGAAAACCAGGGACTACCGCCGTTCGGCACCAAAACCCCACCACCTTCCCCTCACAGAGTGAATGAGGTCAAGATGATTGACAACCATGGCCCTGTGGCCCCGGAGAGAGGGTCTCCTATTCGCCGGTCCCTGCGGAGGGAGAGTAATGGTAATACTGTGGAGGTGGTGAACAGGACCAGGGGTGGTGTGTCCTCTGTGTCCTCTCCTGTGTTCCTGGAGTTCCCCCCAGGGCACCATGGCGACAAATTGTCCCAGGGTCACCTCACCCCCAATGACCCTCAGACCAGTGAGCGAATGAAGGCCATGGAACAACAGATCGCCAGTCTTGCTGGCCTTGTTCAGCATGCACTTTTTATTGGGCCAgctgagagagatgggaggactgCTTCTCCTTTCCATGCAAACAACAGTGCAGGAGTGTCACCAGTTCCTGCAGCCAGAAGCCCTGCCCTCCTGGCAGACGCCGCCAGTGCTCTAGTCTCTCAGGCCCATCCCCCTGACCCCGCCCTGCAGGTCACACTGACCACTGTCAGGAGGAACGTCACTGATCTGCGACAGCAGCTGCACCATCTCAGACAGCTACAGATGCAGAACCAAGACAGTGTGAGGGTGATGCTGAAGAGAGCGGAGCAGGAGCTGACTGGGGTTATGTCTGAGACCTTACAGAGACAGCAGCATGAGACAGAGCCTGCCCAGAGACAGAGGACCACAGTGGATGAGGAGAGACACAAGTACCTGGCCATGGAGGAGAGAGTACTAGCCCAGCTCAGGGAGCTGGAGGAGTACGTAGACTGTCTGAGAAGAGACTTGTCCTCTTGCCCAGGTCAGCTGTCAGTCACCCTCAGGGATGTGGAGGAGGGAGCTGTCAACCTCAGGAGGGTGGGAGAGGTCTTGGCTGGGCTTAAAGGTGAGTTTCCTAGCCTCCAGGGGAAGATGCGGACAGTTCTGCGTGGGGAGGTAGAGGCACTGCACTTTCTGAAGGAGGAGCCTCACAAGATGGACAGCATGCTTAAGAGGGTTAAAGCCTTGACAGAAGCTCTCAGCGGTCTCAGAAGATGTGTCACAGAGAATCATCCTCACGATCCCGAGCCTGGAGCAGCCAAAGCATTCATAGAGGGGGCTGTAGAGCCTGCCATTGCCCAGTCCGATCCCCCACTGAGGAATCGCCCCACCGTGGAGTCCCCCAATCCCCAGCCCAGGTCCTCTGTCAGACCGCCCCTACCCCAGCTCCAGGGCCAGAACCCCGCAGTCAGGCCAGACATGGCCCCCACGTCTCCTGTCGTCATCCACCGTGTGAAGAGCTCTCCCGTCGATATGCAACCGTGTCAGCACTCAGTGGCCCTGccgcaccaccaccaccccagcccCCCGCTGACCCCCACCCATGGCCGAGACTCCCCCACCGTGGCCAAGGTCAGTCCCCGCAGCCGGGAGAACAGCCCGGCCCTGCAGAAGAGAATGATCACCTGGTGCGGAGATGGACCGGCCCCCACGGCTAGCAGCACTGAGACCACCACACAACCACCTGGCTCAGCGGAGAACCAAACCAACAGGGGCAGCATCAAAAACAAAGTAATGGACATTGAGgctgcagagagagagggggacctgGAGGAGGGGAGGCCACCACAGAGATCAGCAACCTCTGCTGGGAGTCAGTTTGATCAGATTCTCCAGGAGGCCCAGGCCAGCCTAATGATGGCCATCCCTGACTTAGAGTTGACCGAGACGGGGAGGAGTGAGTCTCAGTCTCCCAATCCACCCCTAGCTCCAGACCAGCCATCTCTCCCCCAGACCCTCCCAGAACCAAAGATGCCCCTCAACACTCCACTGCTAGACAAGATGGATGTTCCTGAACCTACTGAGGCATCTCTTCCAGAACCCACTCAGCCAGCTAATGTGGCTTCTGAGATGACTATTCAGGGCAGCCCTGAGCGACCACACAGGCCTATGGTTGAGAAGCCTCGCAGGcccagtgtggagagagagatgaggaacagCCCAGAGAAAGCAGGGAAGTCCCCTCCACCGCCCCCACCACGGAGGTTCTTCACCTCACCATCAAGCCCAGGGCTGACCACAGGGAGGTCTGGAGAAGTCGTCTTTACTACCAGGAACGAAGCTGCCACCACACGGGACGATGAAGAGGCGGTGTTCCTTCAACCCAGTCCCAAACCCACCAGACAGCCCCCAGAGGTCAAGCCCAAGCCCCAAACCACATCTGTTATCACAGCCTCAGCTGagccagaggaagaggaggatgaagaagaggatgaggaggaggatacaTTCATGAAGGAACTACAGGTGTTTCAGAAGTGCACTCTTAGAGATGTAGGCACAAAGTGCGTTGTAGACCTCACAAGCACTGCATCACAAGTCAGACAGATAGAACCAGAGCTCTCCCTTTCACCCAAAGTCCCTAAGGtcatgtattatgttatgggacAGATATCCAATGAAAAGCCTCCATCGGGAAGAACAGACCAatcggaagggagagagggaacagtgtCCCCCTCACAGAATACCAGTGGCTCTCCTTCTTCAAGTCAGATGTCACGTTCTGCATCTGCAAAGTCCTGGCAGCAACCAGCCGGGTCAGCTGACAAACCAGGAGGAAAAGCTCAGAAGCTCCAGGGCAATCAGAAGCAGTTTCGACAGGCCATCAGAAGTACTAAGAAAGCAGGTGGGGATAGTAACCATTCTTTCCTTGCTTTACCTGCTTCTAAGATCCCAGCCTTTTGTCATAGCTCTGGAAAAAACACGTCATCCCCAGATCCTAACTCTGTGCCTAACCCTATTAAATCACCTTCATCCTTCCCATCCTCCTCACACAAGTCTTTCATCCCGTCTCTTAATCTGAGTCGTCTCGTCCCTCCTAGCCCGTCTCTCAATGACAGACGTCAAAATCTTTCCCTCTCGTCTCAAACCCAAAATGGCCGACCCAGCCATTTCTCTTACTgctcatcttcctcttcctccccctcttccaacTCCCCCTCTTCCAACTCATCCTCTTTGTCCCCCACATCCACGtcctccacctcatcctcccctccctcccctccccgaCTGCCATGAGTCAAGGTGCAAGGAGTATCCACCGCATTGCACATATACCCAGCTTCACCGGTCACAAGATGCAATGTGGACACAGCAGCAAAACCACACAAACACCAGCAGCTTCTTTATCCAAGGACATATCATGATCTTTTTATATCTATATAAATTACAGTGGAGGGAAATGCTGTTTTCATGGAAACATAATCCAATTGCAGGGCAGTCTTGTTTCTCTCGATCCCTTCCATACGTTTTTGATAATGAACAGTTTGAAAAAGAAAATACATTGACCTGGTTTTCATTCAACACTCACTTTGAGCAAGAGGACCTTTTTATTTCTGCCTCGGCTTTTGTATGATGATAACCATATTAACAAGATAACTACTTTGCATTACAAATGATCAACACAAAAAGGTGCAAACATTCTAGAATTAATGCTAATGCAGTTTAGTGGTGCTGGAAATctggattttatttttattgatgtgAGAAATCTTTGGTTTAATTGATGGTGTTGAATATAATGTATATTTTATAAGAATGagtgtctgagtgacagataatATGCAGATTTGATCTAAAATAACAATTtattatataaggaaatcaaatGATTTTGGGGATAGATATAGTATATTTCATCTAGCATCTGTCATTCACTTGTCATCTATGCAATGATCTTAGATGTGTAGAGTGTGAGTGGAACTTTAAGGAAAAAAAGAGCTTGGTGATTTCTTAAGCTTCCTATGCATTGCCAAATTGTTTGAGCTAACAAGATAGCTACTGTACAATCAAAGTGATGTTTAGAGGACTTTTATGGCAGTAGATGTGGTAAATgccaaagtatttggttttacagACCATGTATCTAAGACATGCACTGTGTGGATGTTGTAATGTTTTCCTTTGGGATGGCACCAACTTATTTTAACCAAATAGCTTACTGTGATACTCTTATATTCATATCAGTAACTGGTGTTTACATACAAGTACATTATAGAGATTTGACATATTTATCTGTAATATTAGAGAACTATTGTGTTTGCACAACTCCTATTTAGTGTTCTCTGATTTTGTAAAGCTGTAAACCATGTTGTAAAAATGTATTGTGGAATGAAATACTTGTGAGTTTGAAAAACTAATAAAGGGCTTTCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2418356 lncRNA downstream 13621 19657101 ~ 19658710 (-) True G2114851
TU2418289 lncRNA downstream 30387 19641491 ~ 19641944 (-) True G2114789
TU2418285 lncRNA downstream 34843 19630105 ~ 19637488 (-) True G2114785
TU2418288 lncRNA downstream 131750 19539751 ~ 19540581 (-) True G2114788
TU2418296 lncRNA downstream 134695 19537306 ~ 19537636 (-) True G2114796
TU2418466 lncRNA upstream 21003 19745431 ~ 19745687 (-) True G2114910
TU2418474 lncRNA upstream 33363 19757791 ~ 19758133 (-) True G2114918
TU2418475 lncRNA upstream 33805 19758233 ~ 19758454 (-) True G2114919
TU2418589 lncRNA upstream 224604 19949032 ~ 19951995 (-) True G2115032
TU2418643 lncRNA upstream 304272 20028700 ~ 20028929 (-) True G2115086
XM_021589415.2 mRNA downstream 24254 19642973 ~ 19648077 (-) True LOC110508694
XM_021589413.2 mRNA downstream 113776 19541912 ~ 19558555 (-) False LOC110508693
XM_021589414.2 mRNA downstream 113778 19544833 ~ 19558553 (-) True LOC110508693
XM_021589412.2 mRNA downstream 155041 19490721 ~ 19517290 (-) True LOC110508692
XM_021589411.2 mRNA downstream 183783 19484950 ~ 19488548 (-) True LOC110508691
XR_005040232.1 mRNA upstream 31737 19756165 ~ 19787841 (-) True LOC118944854
XM_021588704.2 mRNA upstream 64018 19788446 ~ 19789753 (-) True LOC110508281
XM_036966552.1 mRNA upstream 77561 19801989 ~ 19919902 (-) False LOC110508699
XM_036966554.1 mRNA upstream 77561 19801989 ~ 19919902 (-) False LOC110508699
XM_036966553.1 mRNA upstream 79337 19803765 ~ 19919902 (-) False LOC110508699
TU2417253 other downstream 550275 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 662666 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 663834 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 705852 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 1134712 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2146257 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2148788 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2218553 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2218553 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile