Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021588704.2 |
| length | 1188 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 2 |
| gene id | LOC110508281 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 19788446 ~ 19789753 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0031017 | exocrine pancreas development | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0048699 | generation of neurons | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K09073 | PTF1A; pancreas-specific transcription factor 1a |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2418475 | lncRNA | downstream | 29992 | 19758233 ~ 19758454 (-) | True | G2114919 |
| TU2418474 | lncRNA | downstream | 30313 | 19757791 ~ 19758133 (-) | True | G2114918 |
| TU2418466 | lncRNA | downstream | 42759 | 19745431 ~ 19745687 (-) | True | G2114910 |
| TU2418356 | lncRNA | downstream | 129736 | 19657101 ~ 19658710 (-) | True | G2114851 |
| TU2418289 | lncRNA | downstream | 146502 | 19641491 ~ 19641944 (-) | True | G2114789 |
| TU2418589 | lncRNA | upstream | 159279 | 19949032 ~ 19951995 (-) | True | G2115032 |
| TU2418643 | lncRNA | upstream | 238947 | 20028700 ~ 20028929 (-) | True | G2115086 |
| TU2418644 | lncRNA | upstream | 239445 | 20029198 ~ 20029491 (-) | True | G2115087 |
| TU2418652 | lncRNA | upstream | 250640 | 20040393 ~ 20040612 (-) | True | G2115095 |
| TU2418654 | lncRNA | upstream | 254005 | 20043758 ~ 20044004 (-) | True | G2115097 |
| XR_005040232.1 | mRNA | downstream | 605 | 19756165 ~ 19787841 (-) | True | LOC118944854 |
| XM_021589421.2 | mRNA | downstream | 64017 | 19673514 ~ 19724429 (-) | True | LOC110508698 |
| XM_036966360.1 | mRNA | downstream | 64018 | 19672331 ~ 19724428 (-) | False | LOC110508698 |
| XM_036966552.1 | mRNA | upstream | 12236 | 19801989 ~ 19919902 (-) | False | LOC110508699 |
| XM_036966554.1 | mRNA | upstream | 12236 | 19801989 ~ 19919902 (-) | False | LOC110508699 |
| XM_036966553.1 | mRNA | upstream | 14012 | 19803765 ~ 19919902 (-) | False | LOC110508699 |
| XM_036966555.1 | mRNA | upstream | 14087 | 19803840 ~ 19919902 (-) | True | LOC110508699 |
| XM_021589429.2 | mRNA | upstream | 208284 | 19998037 ~ 20079911 (-) | True | LOC110508701 |
| TU2417253 | other | downstream | 666390 | 19116090 ~ 19122056 (-) | True | LOC110508678 |
| TU2416904 | other | downstream | 778781 | 19007232 ~ 19009665 (-) | False | G2113520 |
| TU2416913 | other | downstream | 779949 | 19007232 ~ 19008497 (-) | False | G2113520 |
| TU2416847 | other | downstream | 821967 | 18958110 ~ 18966479 (-) | False | LOC118944847 |
| TU2419508 | other | upstream | 1069387 | 20859140 ~ 20859530 (-) | True | G2115838 |
| TU2421079 | other | upstream | 2080932 | 21870685 ~ 21871053 (-) | True | G2117313 |
| TU2421081 | other | upstream | 2083463 | 21873216 ~ 21876650 (-) | True | mrps14 |
| TU2421094 | other | upstream | 2153228 | 21942981 ~ 21948258 (-) | False | LOC110508740 |
| TU2421095 | other | upstream | 2153228 | 21942981 ~ 21948258 (-) | False | LOC110508740 |
