RNA id: XM_036966554.1


Basic Information

Item Value
RNA id XM_036966554.1
length 5084
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110508699
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19801989 ~ 19919902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCCTCTATGCGTTGCATCAACAGAGCGAGCTGTCAGGTGCATGGAGCAGAGGCTCGTGCGGTTTGATACCTATACTGCCCACCACCAGTCGCTTCTATTATTTCTCATAAACGGTTGTTTCATTTAGGATTTATCGAATATCGTTCCACTCATGAATGTTGACTTGAGAATACTCTGAAGTGGACTATATCGGTGTGAAGGCTAACACACAGGGATTCTGATGCCTTCCAGACAACAATCTACGATGGGGAATTGAAGAGGCTCCTATCAAGAAAATCGTCTGCAGCAATTCCCAGGCTGTGGACTGAACAGACACCATGAAGGGTCTATCAAGCAGCCGCAGTCACCACCATGTGGTCACCTATGACCCTGCTTCCTACGATGCCCTAGGCCATGGCCACCACCCTGATCGCAAGCCCTACCTGATCAATCAAATGGACATGCCCATGTCCCACCCCTCTGACCACCCCTACTATGGCCAGGTCCAGAGCCACATCCAGCAGAGGAACCACGCTGCCTTCCCCTCAGACAGTAGTGTGGTGCCCTATGGGACCTTCCCCAGACGACACTACAGCAGCTCACACTACGAGCTGAAGGATCGGATGGGGAAGGATGAGTGTCCTGTGGTGCCCTATGGTGTGGGTGTTGGTGTGGGTAACATGGTCCCCAACAAGGGCGTCAACGTCCGCCTGCCAGTCAACCTGCTGGACCAGTTTGAGAGGCAGCCGTCGTTCACGCGGGATGGGTACCACACGCTGCAGTACAAGAGGACGGCTCTGGAGCAACGCAGCGACAGCCCCGGACGCATCCGCCACCTAGTCCACTCCGTCCAGAAACTCTTTGCCAAGTCCCACTCCCTGGAGGGTCCACACACGCACTCCAAGCAGGGCAGCATCAATGGCAGCAGGAATAGCCCCGAGAGTGAGACGCCCCCCACGCAGAAGCACCGCAAACGCAGCAAGAGCAGGGAGCGCTGCAAGTCGGCAGAGCCAAAGCAAAGGAGCTCCACCTCGGGCTACTGGAGCTCAGACGACCTCCTGGATGACCGAGACGTCTGCCACAGCCACAGCCTGTTCCACAGCCCCTCCGGAGTCATGACCATGGGCCGCCACCCTGACAAGTCCCAGTCACAGTACTTCATGGAGGCCTACAACACCATCAGCGAACACGCCATGAAAACGTCGCGCAGTAATAACGATGTAGTAAAACACACCTGTGTCCCCTCCCATATCCCCATAAGCATGGACGCCCAGCTCATGAAGAAGAGCTTGTGGTCGTCCAGTCTAACGGTGAGCAGGGCTCGCGAAGTCTACCAGAAGGCCTCAGTAAATTTAGATCATAAAGCACTAGTGAAATCTGAGGCTTGTCAGCAGGAGCGCTCATGCCAGTTCTTGCAGGTGCCCCAGGATGAGTGGAGTGGCTTCTCACCTCTGGAGGGGAAGGAGGACGATATCCCGTGTCGGCGCATGCGCAGCGGCAGCTACGTGAAGGCTATGGCAGAGGATGAAGACAGCGGAGACTCAGAAGAAAGTCCTAAGCTGTGTCCAAAGATCCAGGCCCAAGGTCGACGGGCCAGCTATCTCAAAGCCACCCAGCCATCACTGACTGAAATGACCACCTTAAAGATCTCCAACGAACACTCTCCGAAGCTGCAGATCAGGAGCCACAGCTACCTGCGGGCGGTGAGTGAGGTGGAGGTGAACGGGCAGATAGAGCAGGTGTGTGAGCAGATGTTCAGCGAGATGGAGTCGCAGGCCATGGATGCGTTGGACCTGCCCATGCCGAGCTGCTTCCGCATGCGTAGCCACAGCTATGTGAGGGCCATGGACCAGGGCTGCTCCGAGGATGAGGGGATGTCTCTGCTGCCCGCCTCACCCCCcaggaccaccaccaccactgtcaGGACCATCCAGAGCAGCACAGTGTCATCATGCATCACAACCTATAAGAAGACCCCTCCCCCGGTGCCGCCCCGCACCTCCAAACCCTTCATCTCCATCACAGCCCAGAGCAGCACCGAGTCGGCCCAGGATGCCTACATGGATGGCCATGGCCAGGGGGGCAGGGATAGTCACCCGCAGGGAGACATGACCATCCAGTCAGGCCTGTCTAACTCCACAGAGAGCATCGACAGCATGAAGGCCCTAACGGCAGCCATTGAGGCGGCCAACGCCCAGGTCCACGGCCCTGCTAGCCAGCATGTTGCAAACAGCagcatcaccatcaccaccaccacctcggCCCTGGCCCATATCACTGAGGACAGCAGGAAGGAGCAGGCCAGGCGGGCCAAGTGCCAGCTGTCCATCGGCATCCAGGTGGATGGGCCAGAAGAGGAAGCTCTGGAGATGGAGGACCAGTCCAAGTACCAATCAATTGGGGTCCAGGTGGAGGATGAGAGgggATACCGGCAGTTCATCCGCTCCAACAGTGTAACGGCAGCAGTACAGGCAGACCTGGACATGCCAGACATATTAGACAGCCCCCTGGACTCCCCAGAAACAGACCTGCCCTTCTCAGGCTCTGTGTCCCGCAAGTACTCCCGCGAAGCCGCCACCTCGCCAGCCTCTGCCTCCACCGTCAGCATCCAGGGCTCGGGCAACCACTACCACGCTTGTACCTCAGACGACTACGATGACGTGTGCTTCGACCCGTCCATCCTGCCCCCGCCTGACCCCTGGATCGACAGTGTGACTGAAGATCCCCTGGAGGTAGTCCAGAAGTCTGTGTGCCAGAGGGACGGACGCTGGTTCCTCAAGCTGCTGCAGGCCGAGACGGACCGCATGAAGGGCTGGTGCAGACAGATGAAGCAGGACGAACAGGAGAACGACCTGCCGGATGACATCTTGGGGAAAATGAGGCTTGCCGTAGGAAGTGCTCAGCTCCTGATGTCACAGAAGTTCCAGCAGTTCCGGGAACTTTGTGAGGAGAACCTGAACCCCAACGCCCGCCCGCGGCCCATCTCTCAGGACCTGGCTGGTTTCTGGGACATGCTCCAGCTGTCCATCGAGAACATCAGCCTGAAGTTTGATGAGCTGCACCAGCTGAGGGCCAACAACTGGAAGCCCCTGGACCCCCCGGAGAGAAAGGAGAGACGGATCCCCCCTCCTGTGCCAAAGAAACCCCCAAAAGGTCACCCTCCCCTGGCCCGTGATAGGTCCCTGGAGAGCTCAGAGAAGCAGCGGCTGGATGCGCGCAAGCGCTTGATGGCCGCCAAACGAGCCGCGTCGGTGCGGCAGAACTCAGCCACCGAGAGTGCAGACAGCATCGAGATCTATATCCCTGAGGCCCAGACCAGGCTATGAGCTCCGCGGCAGGCACACCTTCACCACTACCCATACAGACAGATTCACTTACATCTCACACACCGCTAGATCTCACACACAGGTAAACGCACACATGTGCTTTTAACGGTATGGTTCCTGTGagcacacagacccacacagatTTTGTAATATAACCACACTAACTCTTTTCTCTGTAGTGGGAAGAGAAATGCCAACAGTATAGTTGTTTCTTAGACATATTCTTGTCTCTCTCACAAATTTGATCCTGGTCTTGTTTCCATCCATGTAACATAGATCCTCGCTTGAAGATGACTCCTTCGTGATCCTTCTTTTAAAAAGTGTATCACTTTTACCCACACCTGAGTAACATAAATCATGATCTTGTGAAATGTATAGCATTCTTAATCAATGTAGACACCTGTTGATATCCTAAAAGATAGCAAATAAGTATGTTTAAGTATTTGGTTTCTTTAGCTATTTTTACTTTTACCTAAGCATGGGCCAAACAGAATCCCTTGCTTGATGCCCCATTCAACCTTctcaatattttttggggggattgtAACATAATTGGCAAACGAACAGGGTATATTATGCTAAAGCAATATTCATTTGAAATCAGATCAAGTAAATGTGTAAAACAACTGAACACTTTGGTTTTGAAGTCCCATCTGTAAAGATCAGAGATTTTAGATAAAGAGGATGCCTTCCTTTCTGTAGCCaattctgttggttttgtctgcTGATGCTGTCAATTGTAAAGACATCGTTGCTTATTCTAGAGAATCACTATCTGTTTAAAACATTTTAATCATTAATGGTACAAGGACAACTAGAGACAATTTTCTTTGAACTTAACTCATCCTGGTGATTTCCCTTCTGTAAATTCAGACAGGTGTCTAATGTAGATTTGTATGACAAGTGAGGATCTTTGTGGTGATAAGCAACCCAATATGAAATACCCTAAACACTTAGAGAGGGACACTAAAAAACATCTCTGGAATGCAAGTTGTTTCATTTCTTAACAATGTCTTTCCAGTAGCAAGTTCAGTGGCTTAATTGTATTAGTAAACTGTTTCTTGGTATGTTAGTTTAATCCCAAATGGACTCCTGGAATGCCATGTGACTGTGGTTGAGCAGGCTTAGCTCTGTTATTTCTCAGGAAGAGATGGAAATTCAGTCTGTCAAATCAGGGTCTCCTAgtgctggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtcagtttgtgtgtgtgtgtgtgtgtgtcagtttgtgtgtgtgtcggtttGTGTCCATCAGTgtttagaggtgtgtgtgtgtctcttaaaGTGCTTCCTAATTTCCTCGTTTGATATGTTGGCCTTTCTTCAATACGGTCAAGTAGCCTCATGAACATAATGTACATAGTCAAAACAACACTTGTACTTGAAAAtagccatgtgtgtgtttgtacagaaATTATACATGAGGATGTTCCTTTAAGCATGCAGACAATATTAGAAATACAAAATCTATACCTAATTTATACTTGTATTAGTATATTTATTTAACGATTTATTTATTGATGATTTAGTTTTTTTACTGTTTGGATTCTGTTTTAGTGGTCTGTCATGCTACTCTgatcttatgttgtattgtatagggATTATATGTGCATACATATGAACACAGAATAAAATAATTATGAACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2418475 lncRNA downstream 43535 19758233 ~ 19758454 (-) True G2114919
TU2418474 lncRNA downstream 43856 19757791 ~ 19758133 (-) True G2114918
TU2418466 lncRNA downstream 56302 19745431 ~ 19745687 (-) True G2114910
TU2418356 lncRNA downstream 143279 19657101 ~ 19658710 (-) True G2114851
TU2418289 lncRNA downstream 160045 19641491 ~ 19641944 (-) True G2114789
TU2418589 lncRNA upstream 29130 19949032 ~ 19951995 (-) True G2115032
TU2418643 lncRNA upstream 108798 20028700 ~ 20028929 (-) True G2115086
TU2418644 lncRNA upstream 109296 20029198 ~ 20029491 (-) True G2115087
TU2418652 lncRNA upstream 120491 20040393 ~ 20040612 (-) True G2115095
TU2418654 lncRNA upstream 123856 20043758 ~ 20044004 (-) True G2115097
XM_021588704.2 mRNA downstream 12236 19788446 ~ 19789753 (-) True LOC110508281
XR_005040232.1 mRNA downstream 14148 19756165 ~ 19787841 (-) True LOC118944854
XM_021589421.2 mRNA downstream 77560 19673514 ~ 19724429 (-) True LOC110508698
XM_036966362.1 mRNA downstream 77561 19672331 ~ 19724428 (-) False LOC110508698
XM_021589429.2 mRNA upstream 78135 19998037 ~ 20079911 (-) True LOC110508701
XM_021589430.2 mRNA upstream 166022 20085924 ~ 20119384 (-) True LOC110508702
XR_005040247.1 mRNA upstream 363149 20283051 ~ 20285132 (-) True LOC118944858
XM_021589432.2 mRNA upstream 502481 20422383 ~ 20423841 (-) True LOC110508705
XM_036966708.1 mRNA upstream 541597 20461499 ~ 20463428 (-) False LOC110508706
TU2417253 other downstream 679933 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 792324 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 793492 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 835510 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 939238 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1950783 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1953314 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2023079 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2023079 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile