RNA id: XM_021589436.2


Basic Information

Item Value
RNA id XM_021589436.2
length 1318
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110508706
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20461499 ~ 20475045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATTCTCCTTGGAAGCCCCAAGTGAGAGCCGTTCTTGTCAACATTGCTCTCGTTCTGCGATGGATGTGTAGTCCTATGCAGTTTTCAATGCGTAGACACAGTCTCATGTAGCTGAAAGAGAATATTTGTCACAGGGTCTTGAAgcggacacacacagagagctcaGTGGGCAGGACATGACCAGGGTTGATGGAGCCAGACATGGATTAAACTAAGTACTGTGACACAACATCtgtaaagaagagaggaggagagacgtcAAGAGCAGAAACATCTGTAAATCTCTAAGGGTTCCCTAATCTGCATATTCATACCACGGGAACCACAGACTGTTTGTGGTTTGACATCTTGTGACTGTCATTGAcacaacagaccaaactcatcatAATGGAATCTCTCTCACAACAAGAGTCCATTCTAGATTGTCAGATCTCACAACAAGACTCCATGTTAGAATGTCAGATCTGTTTCAACTATTACAGTTCGTGGCATAGGCCCAAGCTCCTGGACTGCCAGCACACCTGCTGCTCAGTGTGCTTGACCCAGATGAGGATGAGCCAGAGTGAGCTGCGCTGCCCCTGGTGTCGCTGTGTCACCACTTTGCCCCCAGGGGTCTCTGTCTCCCAACTCCTAGATGACCCGGACACTATGGCCATCATCTCTGTCCCATACACACCTGTCTTCATACGGCTTCCGTGTAATGCCTACCTTCCAGTAGAACACCATGAGAGGGCTACAGGGATGGAGGAGGAACATGGAATGAGGGAAGGGGAGGAAGGTAGTTGTAAGAGCGCATTTGGGACCAGGTTCTGCTTAGTGGCTGTTGTGGGATTTGTCCTACTCTTACTTGTGTACATTATACTGCACAGCATGAACTGCAACTCAGAACGGTTCACCATGATATCCTGTGGCTGAAAGActtgatgatgataataataagctATTTCGGATCTTTATGTCTCACTCCCCAAAATTACAGGACATTGTCACAATGCCAACATTCAGGCTATTTCTTAACCACAAATAGTACTGCCATACTGAGTAAGGAAATGGTTGCCATACTTTGTATTTCGAATGTGTTCAGATATATTgaatcattatttatttatttttttcaaatgaTTTCTCATGTCTTTGTGCAATAGACAGTTAAAAAATTAAACCAATCACCATTATGCTTCTCTGTTGTGATTCACCCAGAAAagcacaaatcaaatgttattgtcacatacacatttagcagatgttattgcgggtgtagcgaaaggcTTACTTGTGTTAATTCATATGAAAAACATAAAACTGACCCATTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2418972 lncRNA downstream 5828 20455362 ~ 20455671 (-) True G2115392
TU2418950 lncRNA downstream 17804 20443334 ~ 20443695 (-) True G2115370
TU2418939 lncRNA downstream 25618 20435528 ~ 20435881 (-) True G2115359
TU2418938 lncRNA downstream 26499 20434570 ~ 20435000 (-) True G2115358
TU2418931 lncRNA downstream 40595 20420434 ~ 20420904 (-) True G2115351
TU2419167 lncRNA upstream 14056 20488981 ~ 20546686 (-) True G2115558
TU2419201 lncRNA upstream 42467 20517392 ~ 20518427 (-) True G2115581
TU2419271 lncRNA upstream 179762 20654687 ~ 20668962 (-) False G2115635
TU2419273 lncRNA upstream 179762 20654687 ~ 20668962 (-) True G2115635
TU2419316 lncRNA upstream 202589 20677514 ~ 20737477 (-) False G2115671
XM_021589432.2 mRNA downstream 37658 20422383 ~ 20423841 (-) True LOC110508705
XR_005040247.1 mRNA downstream 176367 20283051 ~ 20285132 (-) True LOC118944858
XM_021589430.2 mRNA downstream 342115 20085924 ~ 20119384 (-) True LOC110508702
XM_021589429.2 mRNA downstream 381588 19998037 ~ 20079911 (-) True LOC110508701
XM_036966555.1 mRNA downstream 541597 19803840 ~ 19919902 (-) True LOC110508699
XM_021589443.2 mRNA upstream 23560 20498485 ~ 20503506 (-) False LOC110508708
XM_036966826.1 mRNA upstream 23560 20498485 ~ 20503586 (-) False LOC110508708
XM_021589445.2 mRNA upstream 23560 20498485 ~ 20503614 (-) False LOC110508708
XM_036966824.1 mRNA upstream 23560 20498485 ~ 20503614 (-) False LOC110508708
XM_021589439.2 mRNA upstream 23560 20498485 ~ 20503615 (-) False LOC110508708
TU2417253 other downstream 1339443 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1451834 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1453002 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1495020 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 384215 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1395760 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1398291 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1468056 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1468056 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile