RNA id: XM_036966825.1


Basic Information

Item Value
RNA id XM_036966825.1
length 2652
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110508708
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20498485 ~ 20503690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGAACTGTTTTTCAAACTGAAACCACACCTTTGGTAATCATCAATTTAAGGCCAGGTGTGTCTAGCTCACACTTTTAATCAGTTTGTTGTGAGGCAAGTCAAGTTGATCTATTGTTCTGGTGGCATCGGCACACTGCTTTGAGTTTAGGTATGGCAGCAACACAATTTGAAAATGGACCACATGTGGCAGCGGGGCACATTGGGCCACAACAGCCAGTTCCTCAGCCCAACCCTGGCACATGGCACCCAGTGCATGGACCCGAAGGATCAGGGCCCCATCTGACCGATCATCAGCCCCATCCTCATGTGCACCAGTCTCGACCCTACTTCTATGTGcagccccctcctcctctccccctctaccacTACCAGTGGCCCATGCCCTACAACCCCTGCTCTGGATTTCCAGGTTACGGTATGCCGGGAATGGTTATGCCACCTTTCCTTCCCCACCCATACATGGAGGTTCCAGGTTATATTCTTCCTCATTCCCAGCTGCACCCTGCAGAATACAGACAATACCAATTCCGTCCTGCTGCCATGGCctaccagaacaacagcaggaTGTCCAGAACGTTTTACCACAACCCCACACCCATAGAGATGGTCAACTCTGAAGTACAAACTGAACCACCACCTGAAGTGGTGAAGGATGGTCCCCCCTTGGCTAGACTACTGGCTAGGTCAGACTTTGGAAGAGGCACCAACTCTACCACCACCTCATCTCTAAGCTCCAAAGCAGAGAAACAGAGCTGCCCAGAAGAAGAACCTAATTCCCCCATTGCCTCCAAAACTGGATTCCAGGGGATACTGAGGAGCCAGGGTACTGGCAAAGACCCACCTGCAGGAACAAAGACCATCCACTCACGTAGCATCTCTATAGAGTGGATGACACAGAATGGACTGATGGTGCCAGAAGATGTGGCACAAGAGTTGTCTGAAAAAGTGTCAGATGATCATCCTAATCAAAGCCAGATGTCCTTTTATAGTCAGGTACCCAAAAAGTTGAATGAGTCCGTATGGTCAGTGCAGTCTTTGGCCCCGTATGTCCCCTCCAAAGAGTTGCTTATGGAGAATGGCATTGTGGTGACTGAGAAAGAAGCAGATCCTTCCAACGTCAGTCAAGACCTCGCAGCCAGTCAGGTCATAGCtataacagagaggaggagaagtcTGAGGTTTTCGCTGACTTTAGAAAATGTGAAAGAGGCAGAGAACATGGCTGATGTGAATACTTCTTCATGCCAAGAGTCCTTCCATTATAGCCAAATACAGCAAAAGGCTAATGCGTCTGTTTGGTCAGTGCAGTCTTTGGCGCCATATGTCCCCTCCACAGAGTGGCTGATACAGAATGGGCTTTTGGATCATGAAGCGTCGACTGCGAAAGAATCGGATGCGAATGTCAGTCGAGGCCACACAGCTAGTCAACTGTTGGCTATAACCGAGAGAAGTCAAAGGTTGTCCCTGTCATCGGTAGACACACTTCCCCCTTATGTTCCCTTTTCCTGTTTGCTGGCCGACATGGGAAAAATGTACTACAGAAAGCATCAACTAGGCACTGCAGAGCATAAGCAAGTTTTCAGCACGCCAATGGATAAATTCATCCCATCAAAGAGGCTGAACTCTGAAGCTCTTCCCAGGAGGAAAAGGCAGCTCAAACTTAGCCACAACCTACACATGGAGCTTGTGGAAAAAGGTTATCCTACAAGCCAAAGTGCAATGATCCCAAGTGTTGAAGGATCTTTGAATAGCACTCAAGGGTCAGTGAAACCCAAGGCTCAACGTAGCCCAAATCAGAAGGCTCTGAAAGTTACAGAGCCCAGGGTCCTGAGCCCTCCCTGCTCTCCAGATGACCCTAAACCATATTCCTCCAAATGCCTAGCAGGAGACAAAGCACCTGGCTGCAGATATACAGGTTGCTGCAACCAGAAAATGGAGGCGGAGGTGATGGAACCTGCCAAACAGACTGGGCCTATTGTACCCAGTCGACAGGACTGCGAGCAGATTGCAGATGTTAGGGTGCCAACGGCTCCCTCATCAAACGGACACTTTAAGACGTGTGGTCTGATGTGTTCAAAGCTACAGGAGAGGAACTGCTACTGTGAGGCGCCGAAGCCAAACGGAGTGAGTTTCAGGAAGCGCCACACAGGCAGACTGAATAAGGGAAATGTGGCCAAGGTGGCCGCCGATCTCATCAAGCCTCAGGCACAGCAGCGTCTCATTCCACAGAATCAGAGACGACAGATGGATTCCAGGGGAGCAAACAAGGCCATGCCTGATCATGTAACTTGTGATAATGGATATGGGCTGAACAACTCAAAGAAACGGGGACGATGGCAGAATAGACCACAGgACAGAGCACAGACTAACCCATCAAACAAGCCTTTTGGACAGCAGAACACCCAGAGGAATGGTGACGAAGAACCCTGGACTGGGTATTATGGCAGATCTGGTAAAACAAGAGGAGCAAATGGGAGAAAcccaaggtactgactgaccagACAGACGGTCAACAAATGACAATGAAGACATTTTTTAATAAccctatttataggcctatctaaaataaagttttttttttccttctccaAATTAACTCCTTGAGTTTTGAAGTGGTGGAAGAATTTTAAATTAAAAGTAGAAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2418972 lncRNA downstream 42814 20455362 ~ 20455671 (-) True G2115392
TU2418950 lncRNA downstream 54790 20443334 ~ 20443695 (-) True G2115370
TU2418939 lncRNA downstream 62604 20435528 ~ 20435881 (-) True G2115359
TU2418938 lncRNA downstream 63485 20434570 ~ 20435000 (-) True G2115358
TU2418931 lncRNA downstream 77581 20420434 ~ 20420904 (-) True G2115351
TU2419201 lncRNA upstream 13711 20517392 ~ 20518427 (-) True G2115581
TU2419271 lncRNA upstream 151006 20654687 ~ 20668962 (-) False G2115635
TU2419273 lncRNA upstream 151006 20654687 ~ 20668962 (-) True G2115635
TU2419316 lncRNA upstream 173833 20677514 ~ 20737477 (-) False G2115671
TU2419315 lncRNA upstream 175083 20678764 ~ 20681820 (-) True G2115671
XM_021589434.2 mRNA downstream 23440 20461499 ~ 20475045 (-) True LOC110508706
XM_021589436.2 mRNA downstream 23560 20461499 ~ 20474925 (-) False LOC110508706
XM_021589438.2 mRNA downstream 25595 20461499 ~ 20472890 (-) False LOC110508706
XM_021589433.2 mRNA downstream 25596 20461499 ~ 20472889 (-) False LOC110508706
XM_036965893.1 mRNA upstream 125672 20629353 ~ 20634607 (-) False LOC110508714
XM_036965892.1 mRNA upstream 125672 20629353 ~ 20637042 (-) False LOC110508714
XM_021589456.2 mRNA upstream 125672 20629353 ~ 20637057 (-) False LOC110508714
XM_021589458.2 mRNA upstream 125672 20629353 ~ 20637057 (-) False LOC110508714
XM_021589454.2 mRNA upstream 125672 20629353 ~ 20637091 (-) False LOC110508714
TU2417253 other downstream 1376429 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1488820 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1489988 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1532006 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 355459 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1367004 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1369535 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1439300 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1439300 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile