RNA id: XM_036965893.1


Basic Information

Item Value
RNA id XM_036965893.1
length 2271
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110508714
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20629353 ~ 20637091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGTCATATCTGATTAagatcataacatggtgcctCAACCTCATCAAATATAAAACAGGTGAgattatgaaaaaaaaaaagttttgtcaGATTTTAGTGACAAAGTAGCTAACAGCTAAGTgctctcatgtctcttcattgAGCAGAGCAGCCCAAGTGGAGCCGTTGCTATGGATACACACAGACTCAGAGCCGCCAGCGGAGCGCATGCAGACTGAGCTGTGCGCAGGGAGCGAGTGataaacagagaggagcagctaaTGGGTTTACTAACAGAGTGTTTCATGTGAGCCTGGTATGATCTGTCCTCAGTACTATTTACACTGGAAGAAGAAAGGTTTGTGAAACAGCTACCAAAATGTTGTAACTGCCTGCCCATTGGCAGATGGTATCCTTATTCGACTTGGCTTCCTTTGGGAGAGGCTAACTGTGTGGCAGTATGTCAGATGGGAACGAGTCCTGCATGTTCAGAGATGGAGCCGAGTTTGTGGCCTGCATCTTTCACGCATTTGAGGAATGGTCAGGACTAGGACCCCTGGAAGACTATCTGAGCTATCTGGAGTACCTGGCCTGGGTTTTCACCCCTCTGGTCGTTGTTTTCATCCTGCCCTTCCTCATTGtgatcctcctctacctctccataCTCTTTCTCCATGTGTACAAACACAAGAACCAGCTCAGGGAGGCCTACTCCAACAACCTGTGGGATGGTGCTAGGAAAACTCTGGCAACGTTGTGGGATGGCCACGGGTTCATATGGCacgGATATGAAATCCATGGCATGGAGAAGATTCCAGATGAAGGAGCAGCTCTTATAGTCTATTATCATGGGGCTATTCCCATCGACTATTATTACTTTCTGGCAAATGTCATCATTCAGAAGGGACGGATTGTTCACTCAGTCGCTGATCACTTTCTGTTCAAAGTTCCAGGGTTCAAGCTGCTGTTGGAGGTGTTTAGTGTGATCCATGGGCCCCAGCAAGAGTGTGTAAAGGCACTGAAAAGTGGCCACCTCCTGGGCATCTCACCTGGAGGCGTGAGGGAGGCGCTCCTCAGTGACGAGGCCTATCAACTGCTCTGGGGGAAGAGAAAGGGTTTCGCACAAGTGGCTATCGATTCCAAAGTGCCAATAATTCCCATGTTTACTCAAAACGTCAGGGAAGGATTCCGATCTCTCGGCGGGTTAAGCTTTTTCAGATGGTCGTATGAAAAATTCCGCGTGCCGATGGCCCCCGTCTATGGGGGTTTTCCTGTGAAGTTTCGTACATACTTAGGTGACCCCATCCCATATGACCCTAACATTAGTGCAGCAGAGTTAGCTGAAAAGACCAATCAAGCAGTTCAAGCACTCATTGACAGACACCAAATTATTCCTGGGAATGTCCTTCGAGCACTACTAGAGCGATTCCACAGGAGGCATAAAGAAAAATAGCCATAAGGAatatcatttttttgttgttatatgAAGCAGTTACATATTTTTTAAGACACTGTTACATATTGAAAGTATTATCATGTGATCTGTTGAATGGTTAACTACAGATGTgcatcttaatttgagccagtctcctatagcaggaaaataatcctgtagattataattaatggacatttttgtagtggTTGATAAATTTTTCATAAGGAaaatcaaagtggaaattacaaacttcagaagcctttttaacctcaaatacactacaaactTCTCCTACAATAGGCTGATCAAATTAAGGTCCTGCACCTATACATTATTATTGTAGGTGTACTTTCAGGAGCTTTTTGCACTCAGATTTTGTCACAAAACAATATGTACCGAAGGTAAATTGTTATGGTATAATACACCGTAATTGGTTAATGTCAAATGTGCATATTGAAATTGTATAGTGTTTTTTTGTGCACGTATGTAGATACTTTGATTCCACAATTGATTTGCACACATTGTTCTAAGTTCCACCACTGCCAACAATTTATATTTAAGAGGCCTTTATTTTGATTAATAACTGCAAATATTGAAACGATATAGCAATTGCTATATAAGAAGCAATATAGGTATGAAGACCGGGCAGCTTTATTTCCTTTCACCTGGGTAAAATGTTTGacattttatttaaataattttgtaatttccccccaaaaatgtattgtggaaTTATGtaagtatgtactgtagttgtaGCCTATGCACCTTTTAAAAATCTATTGAGGTCCATTATGAAACAGGACAGAAATGATTTGTAatgttaaaataaatatatattttattatgaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2419167 lncRNA downstream 82667 20488981 ~ 20546686 (-) True G2115558
TU2419201 lncRNA downstream 110926 20517392 ~ 20518427 (-) True G2115581
TU2418972 lncRNA downstream 173682 20455362 ~ 20455671 (-) True G2115392
TU2418950 lncRNA downstream 185658 20443334 ~ 20443695 (-) True G2115370
TU2418939 lncRNA downstream 193472 20435528 ~ 20435881 (-) True G2115359
TU2419271 lncRNA upstream 20080 20654687 ~ 20668962 (-) False G2115635
TU2419273 lncRNA upstream 20080 20654687 ~ 20668962 (-) True G2115635
TU2419316 lncRNA upstream 42907 20677514 ~ 20737477 (-) False G2115671
TU2419315 lncRNA upstream 44157 20678764 ~ 20681820 (-) True G2115671
TU2419287 lncRNA upstream 51324 20685931 ~ 20690570 (-) True LOC110508717
XM_036966827.1 mRNA downstream 125663 20498485 ~ 20503690 (-) True LOC110508708
XM_036966825.1 mRNA downstream 125672 20498485 ~ 20503681 (-) False LOC110508708
XM_036966828.1 mRNA downstream 125674 20498485 ~ 20503679 (-) False LOC110508708
XM_021589439.2 mRNA downstream 125738 20498485 ~ 20503615 (-) False LOC110508708
XM_021589442.2 mRNA downstream 125738 20498485 ~ 20503615 (-) False LOC110508708
XM_021589461.2 mRNA upstream 51319 20685926 ~ 20730655 (-) False LOC110508717
XM_021589462.2 mRNA upstream 51319 20685926 ~ 20730656 (-) False LOC110508717
XM_036965896.1 mRNA upstream 157533 20792140 ~ 20797546 (-) False LOC118936610
XR_005040123.1 mRNA upstream 157533 20792140 ~ 20799687 (-) True LOC118936610
XM_036965895.1 mRNA upstream 168604 20803211 ~ 20807499 (-) False LOC110508719
TU2417253 other downstream 1507297 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1619688 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1620856 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1662874 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 224533 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1236078 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1238609 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1308374 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1308374 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile