RNA id: XM_021589461.2



Basic Information


Item Value
RNA id XM_021589461.2
length 7875
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110508717
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20685926 ~ 20730656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctgtggtaacttgTGACGACCTCCTCTCGGTTGTGCGATTCTGAAGCAGGTCGCCGGTCCTCAGTGTTTATCTGGTCGTCATGGCGGAGGGACGTGGAGAGCTACCGCCTCAGCCGCCGCTTCATCTATCTTTACCCCCGGCCAGCAAGCGACTGTGCTTGCGCCCGGCTCCCCGAGGGCCTGGTCCAGGGCCTGGTCCAGGTTTTCCGAACTCTCGGTTTCGCTGCCCGGAATCTCTATTGGACTGTGCGGCGAAGGCTGTAGCGGAGAAATGGGCCTTTGAGAGGGTGGAAGAGCGCTTCGAGCGGATCCCAGAGCCAGTACAGCGACGTATAGTGTACTGGTCTTTTCCGAGGAACGAAAGGGAAATATGTATGTATTCGTCGTTTCAGTGCCGCGTCGCCGGCGAAGAGGGTCCGGCGGTAGGAACAGGGGCTCCCGCTGGATCCGGGGCTGTCCCTGGAGGGGTTACCAGTACGACGGGGGCAGCGGGCACCGGAGATGGACTGCCTTTCCGTCGGGGCATTCGGCTTTTAGAGACTggttgtgtggaaaatgtcttACAAGTCGgttTCCACCTCAGTGGCACAGTCACGGAGCCCGCCTCCCAGTCGGAGCCCGAGGTCACCCACAAGGTGGCCATCAGCTTCGACCGCTGCAAGATCACCTCGGTCACCTGCGGCTGCGGCAACCGAGACATCTTCTACTGCGCCCATGTGGTGGCCCTGTCCCTGTACCGCATCAGGAAGCCAGAGCAGGTCAAGCTGCGGCTGCCCATCTCAGAGACCCTGTTCCAGATGAacagagaccagctacagaagcTGGTCCAGTACCTCATCACAGCACACCACACAGAGGTGCTGCCCACTGCCCAGAAACTAGCCGACGAGATCCTTTCGTCCAATTCTGAGATCAACCAGGTCCATGGGGCCCCGGACCCCACGGCAGGGGCCAGCATTGATGACGACAACTGCTGGCACCTGGATGAGGAGCAGGTCAGGGAGCAGGTCAAACTGTTCCTGTCCCAGGGAGGGTACTACGGCTCCGGGAAGCAGCTAAACTCCATGTTTGCCAAGGTGCGAGAAATGCTGCGGATGCGTGACTCTAACGGTGCCAGGATGTTGACCCTGATCACGGAACAGTTCATGGCCGACCCTCGCCTCTCTCTGTGGCGGCAGCAGGGGACTGGCATGACGGACAAGTGTCGGCAGCTATGGGACGAACTGGGTGCCCTGTGGGTGTGCATCGTGCTGAACCCGCACTGTAAGAGCGAGGAGAAGAGCGGCTGGCTGAAGCAGCTGAAGAAGTGGGGCGACATGGACATCTGTCCCCTGGAGGACGGCAACTACGGCAGTGAGTTGCCCAACATTACCAACGCTCTACCACAGAGCAACTTCGCCCAGGACTCCCTGGCCCGGCCCAGACGGACAGTGTTCACGCGGGCCATGGAGGCCTGTGATCTCCACTGGCAGGACAGCCACCTGCAGAGGATCATCAGCTGTGACTACTACATGTCCCCAGCCTaccagagagagggcgagagtctGCTCTTCAACCCGCAGGGCCTGCCTCTATGGCTAGATCACGTCCCCACAGCGTGTGCGCGGGTCGATGCCCTGCGTTCCCATGGTTACCCCCGCGAGGCGCTGCGGTTGGGCGTGGCCATCATCAACACCCTCCGGCTGCAGCAGCACCGCCAGCTGGACATCTACAAGCACCAGAAGAAAGagctgctTCAGAGGGGGACAACCAGCACAACTAACCTGGAGGGCTGGGTGGGACACCCCCTGGATCCCATCGGCTGTCTCTTCACCACCCTCACTGAGACCTGCCGGGTGGAGGACGACAACGCTATGGACACTGGAGACTCTGGAGAGCACAAGCCCCCGGTATACCACCACGTGCCTGTGTGGGGTTGCCCAGATGGTGGGGAGTCCTACCTGGCGCTGGCCCTGGAGGTGGCCCTGATGGGCATGGGGCAGCAGAGGGTGATGCCTGAAGGCCTCTATGCCCAGGACAAGGTGTGTCGGAACGAGGAGCAGATCGTGGCCAAGCTGCAGGAGATGGAGCTGGATGATCTGCTGGTCCAGACGCTGAGGAAACAGGCTATCCTCCTACTGGAAGGAGGTCCCTTCAGTGGCCTTGGTGATGTCATCCACAGGGAGAGTGTTCCCATGCACACCTTTGCCAAGTACCTGTTCTCAGCCTTGCTGCCCCATGACGCAGACCTGGCCTACAAACTAGCATTGAAGGCCATGAGGCTCCCTGTGTTAGAGTCGATGGCGCCCTCGGGAGACTTGGGTCACCCCCACCATGGCATCAGCATCGTGCCCAGCCGATATCCCCGCTGGTTCACCCTGGGCCACCTGGAGTCTCAGCAGTGTGAACTGGCCTCTACCATGCTCACCGCAGCCAAAGGAGATATGTTGAGATTGCGGACGGTGCTGGAGGCCATCCAGAAGAacatccactcctcctctctcatcttcaAACTGGCCCAGGATGCCTTCAAGATCGCCACTCCGGCTGACAACCCCCCAGACATCACCCTGCTCAATGTAGCTCTGGAGCTGGGCTTGCAGgtgaTGAGGATGACCCTCTCCACTCTGAACTGGAGACGCAGGGAGATGGTGCGCTGGCTGGTCACCTGTGCTACAGAGGTGGGTCTGCGAGCGCTGGTGAGCATTCTCCAGAGCTGGTACACCCTGTTCACCCCCACCGAGGCCACCAGCATCGTAGCAGCCACCGTCATGTCCCACAACACCATCCTGCGCCTCAGCCTGGACTACCcccagagagaggagctggcaaGCTGCGCCCGGACCCTGGCCCTGCAGTGTTCCATGAAGGACCCCCAGAACTGTGCCCTCTCGGCCCTCACGCTCTGCGAGAAGGACCACATCGCCTTCGAGACGGCCTACCAGATCGTCATCGACGCCGCCTCCACAGGCATGACGTACTCTCAGCTGTTCACCATCGCCCGCTACATGGAGCACCGCGGCTACCCACTCCGAGCCTTCAAGCTGGCCTCGCTGGCCATGACCCACCTCAACCTGGCCTACAACCAGGACACCCACCCGGCCATCAACGACGTGCTCTGGGCCTGCGCCCTGTCCCACTCGCTGGGCAAGAACGAGCTGGCCGCCATCATCCCCCTGGTGGTGAAGAGCGTGCACTGCGCCACCGTGCTCTCGGACATCCTGCGTCGCTGCACCATGACGGCCCCGGGCCTGGCCGGTATCCCCGGGCGACGGAACTCTGGGAAGCTCATGTCCACGGACAAGGCTCCGCTCCGGCAGCTGCTGGACGCCACTATCAGCGCCTACATCAACACAACCCACTCCCGGCTCACTCACATCAGCCCCAGACACTACGGAGAGTTCATAGAGTTCCTCAGTAAGGCCAGAGAGACCTTCCTACTGGCCCAGGACGGACACATCCAGTTTGCCCAGTTTATAGACAACCTCAAACAGATCTACAAGGGCAAGAAGAAACTCATGATGTTGGTACGGGAACGCTTTGGCTGAACCCCAACAGGACGGGCAATATGGGATCTACTTTTAGTACTACTTACTCATTTATTTAAGTTTTCATACATTTTCTCTTTTTTTGTCATTCTTGTGGCAAATTCTGtatgtctgtttttgtttttgtctttttatTTTCTCGTGAGCAGCAACcactgtttgttttagtatgaaaaagattgtgatgatgatgataaaatCGTTGAGGTGGCACATAATGAAAAACCAAATGATGTATGGGGTGTTTTGAGCCAGGGAATGTCTGCTGTCTGCTGTGGGGAGTTACTAGTGGGGTTTGAAGGAGAGAGAACTTGTCATTCCAAAAACCAGAGATGTGGACTTGAGTCACGTGACTTGGGACTCGTGTACTACTCTAGTCACACATTTTGAGACTTGACTTGACTTCAACCGTATGACTCGAGAGACTAGATTTGTCATCTCACCCACTATGTTAGGCTCTCTGTCCTTTATATCGGAGTGCTGCAGGTTCTGtgtcttgaccaatcagattcacGGAAATCACAGGTTGCGCAGGCCGGGCACAAAGCACTTCCTCTAGCAAAGCTCGCGCCGCTCCGCTGTCCTCCGATATTTATTTAGCAAACGTGACAACACATCACTCCTCACATACACAAGCAAGAACTCTTCACAGAAATGTTGCTGCAGCCTACACCTAAATTGTATGGGAAGAAAATGAGCCTGATCAACTAGGCTACTGATAACAAGCGCAGCTGCATAGGCTTCAGTCAATGCGCCCTGTACCCCTTTGCCCTCTGGCCAGGGTAAACGAAGTGGTTAAGTTATGTAGCCTATGTATAGCCTGCTTATTTATGTTAAAAGAACatgtgaatgtgatcaaatttggtttaggctataTTCAAACTTGGGCTGGCTGGCTAGGCTACCTTGACCTTTTCAATCCAAAATGATTCACTGAAATGAAtcaaacaacacaaacacactgattACATAAATATACTGCGTGAGTTACTTTTTAATTTACAGTTGCTTAGGCCTATACGATGCAAACctgcataaagcaagctcagccctgtgagttctaGTGTCCGATTGCAGTGGTTGTGTCTGTGTAAAGGAACGTTGTAAAATCGAAATAATATTAACAAGTACAAGGTTGCTGCAGTGTGACAGGGTTTTCATCCTccctagggccaggagtttttccagaAATGTTAAAACCATGTGGCCTGTTTAGAACATATCTGTATACCTaggtgtcaggtagcctagtggttaagcgcGTTGGGCCATAAACTGAAAGGTcattggtttgaatccctgagctgactaggtgaaaaatctgttgctgTGCCCttcaacaaggcacttaacccgaaTTGCTCTGTATAAGATGGTCGGCTAAATGACAGAAATCGTTCCACTTCCATATGAGTACCTTTTTACAACTACTAATGAATCACTTTCAGCCACTGTCAGGGTCCTGATTTATACCTGGTTAGATGACCAGATTAGGAAAAGCTCCAAGCCCCAAGGAAAATAATCTGccccaccactctgggacctgtggtGCGCCTCTGCATCAGGGCCTCATAGGTCACAAAAATCATTGCATGTGGGTCCAAAATCACTGATGCAGTTGCAATGAAATTGGGATAAACCACTTAATAATTGATTTAAAAGACTCAAAACCCAAAATTAGGGACCTGAGCTGTGGAACTTGCCCATTATTATTTGTGACTTGACTCTAAGGTAAAGACTTGAGACTTGCTTAGGACTTGTGACTTGGTCCCATCTCTGCCAGAAACACTGAAGCACATAGTGTTAACTTACTGTCATACCTCGATCGTATTCCAAGGACCAGCTTTAAACTTTCCCTGTTAAAAGGCCTCGTTTCAAGGCACTATGTTTGGAGGAGGTAGAATGTGTATCCCCATGGCCCAGTGCCCGAAGTCTAAATCTACCAGATTCATCAGGCACATACAGAGTCCTCAGACTTGACCaagcctctcaccctctcccacATGTATTCTCCTCCTTCCTTGGGTGTAGCCTGATCGATTTGTCTGGTATCTTGTATTATTTCTAGCGAAGGGACCTTTCAAAAAGAGCGAAGcgtacagagagagcgagagagagagccgtGTTGCTTCAGATTGGTATTAGATCACGGCGAGATTGATTGACTGGCCTTGTCGCCTGAGAACGATACTGCCACTGTGGATCTTAGACTGTGAGGTGGAGTGCCTGGTGTTGTCGGGATTTGGGGTTGTAACATACATGTTGAAATACCATTTGCTGAAAAACATCTTGTATCTTTCATAGCAAAGCGTGTATGAACGCGTACTTTTAAACACCACGCGTTGGTGTAGACAGTTGGTGTTTAGTATTCCACATACAACCTTAACTATACGTATCAACCTCTCAGACCCTGTGGGAAAGTGTTTTTGACATGGCAGTGACTGCTTGAAGTTTAGCAGTAGTACTATTGTTATACAAGCAATTGACAAATTTCATGCACTCAACACCATTCTGTCTGCTTGAGCAATTATTTATCGATCATTCAAATAATCTGTGTGTGAATGAATACTATTAATACAGACATAGACAGCATATAATTATATTTAATATACAAAAATAGGAATATTAGACAGACACATTTTGAGACTATGAAAACCGTTCCATGTCAGCTTCCACATTCCATTGTTGCCACCTCTACCAAGCTCGGCAGGTGGTCTGGGGCCGCAGATGTCTGTCTGAGGCCGGGGTTGGAAGTAATATGGTCAAGAAAGGATGACGAAAAACAAAATAAAAGAGACGAGATGCTAAACTCAGTTCTCAGGGAATCACTTcaagaaacaaaaacaaaaaagtagTAGCATAAGCATTTAAGATATTGTAAATATAAAAGTGTCAATTCAGAAAATTGTAAAGTTATAATTATTTATGATAACTGTATGTTTTAGTTTTTTGGGATACTTGAATTTGTTGTgggctgggaatgtgatgacagtTAGACTAAAAGACTTCAAGACATTTCTCAGGTGCTCCTGTGTACATTTTTCCGAATTTTTGtttcaatgttttatttgtaTGTTTGGTTTAGTTTTTGCAACGTGTTTTCTAAGAGGAAGCACGTCATTTCTAAATTTGGGGAAAAAAGAAGGCATACCATTGTGTACAGAAAGCAACCTGACTATGCAGAAACCACTTGATGGTTTGGTCCCCTTCTCCGGAGTCACCCAGACGAATGTCTGAGGGGGGCTAGCCACTATCCtagaggggacaggggacagacaAGGCACGACACGGCATGTTTGTATTTGTACCGAGCCTGCACATGCTGCAATTTGGGACAGACTTTGCCTTTGACCGATCAATGTACGATGACTTTCTTTGGACTTAAGCCTTTAGTGTCTTCTCAAAGTACCGGTGTCAGGGCCTGACATGGCAATGAGAGTTTAGGGAGAACAACAGTCCAAaagaaatgaaaataaaaaccCTGCATGCCCTACACCAAGGAAGGAACTGGCAGATAATATGAATGGGTgtctgtgtgccccccccccaaaacatccTATCTTATATTTCTTCATGATTTTAAGCCTATTCAGTTCAATTTACCTGAACGGCCCCGGCCATGCTCTGAACCATTCTCTACAACCCTTATTGAGCAGTTGAGTTATTCTGCTCCATCCTTGCTTCCATTGCTGGTCTTAATtccttttaaaaatatttttttctctcgcTTTTGCAGCATCCTCTGTTTTTTTCATTCACTAGCTACCGCACTACTTGaacctgagaggacaggagaggacaaaaCAAGCATTTTTTTTCAAATGTGATGGAGATGCTTGCATTTTTACAGACTATTGCAGGTTAATGTAAAGCTGCCTGTTTATATACACACTTCAAACAACAAGCATTTTCCTATCGCTGAAGTAGTTGGTCCTACGGCATTgcaaaaaaaaagaaggaaaaaatgGAGAAAACTCCTCTGGCTTAATTTCTTTCTTTCCCATACTCGTTGTCTATATGTGTTAACTGTACCAGTGTTTTCACCTGTCCCTAGAATTTAGAAGGAAATAATAATCGCTGGTAGAGCTTGTTCGCTAGTTCATCTACTGTTTGATTTTGATTTAAGGGAAAGTGTTTGTTGCCTCTTTGTGCTACTGATTTATATAAAAGGTATCCAGTATTTGTTGCCACAAAAGTATAGTTCATCAACACTTTTTGTTTGTGCAACCTCTTGAGCAAATGTCTTTCAAACAAAAATGTATTACTATTTATGTAACGCTACTACCATTTTATATAATTTGTGTTGGAATCTCAGTGCTTTTCTATGAATAAAGTGTGAAACACGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2419315 lncRNA downstream 4106 20678764 ~ 20681820 (-) True G2115671
TU2419271 lncRNA downstream 16964 20654687 ~ 20668962 (-) False G2115635
TU2419273 lncRNA downstream 16964 20654687 ~ 20668962 (-) True G2115635
TU2419167 lncRNA downstream 139240 20488981 ~ 20546686 (-) True G2115558
TU2419201 lncRNA downstream 167499 20517392 ~ 20518427 (-) True G2115581
TU2419482 lncRNA upstream 65674 20796329 ~ 20845750 (-) True G2115812
TU2419465 lncRNA upstream 72698 20803353 ~ 20809150 (-) True LOC110508719
TU2419470 lncRNA upstream 79297 20809952 ~ 20813045 (-) True G2115806
TU2419472 lncRNA upstream 82494 20813149 ~ 20822230 (-) False G2115807
TU2419474 lncRNA upstream 82494 20813149 ~ 20823179 (-) True G2115807
XM_021589454.2 mRNA downstream 48835 20629353 ~ 20637091 (-) False LOC110508714
XM_021589455.2 mRNA downstream 48835 20629353 ~ 20637091 (-) False LOC110508714
XR_005040122.1 mRNA downstream 48835 20629955 ~ 20637091 (-) True LOC110508714
XM_021589456.2 mRNA downstream 48869 20629353 ~ 20637057 (-) False LOC110508714
XM_021589458.2 mRNA downstream 48869 20629353 ~ 20637057 (-) False LOC110508714
XM_036965896.1 mRNA upstream 61485 20792140 ~ 20797546 (-) False LOC118936610
XR_005040123.1 mRNA upstream 61485 20792140 ~ 20799687 (-) True LOC118936610
XM_036965895.1 mRNA upstream 72556 20803211 ~ 20807499 (-) False LOC110508719
XM_021589466.2 mRNA upstream 72556 20803211 ~ 20808564 (-) False LOC110508719
XM_021589464.2 mRNA upstream 75097 20805752 ~ 20808573 (-) False LOC110508719
TU2417253 other downstream 1563870 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1676261 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1677429 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1719447 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 128485 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1140030 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1142561 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1212326 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1212326 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile