RNA id: XR_005040123.1


Basic Information

Item Value
RNA id XR_005040123.1
length 2793
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118936610
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20792140 ~ 20799687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacgcacgttctaatgaactcgcacaccgaatcagcgtattcgtcaatgttgttgtctgacgcaatacgaaacatgtcccagtccacgtgatggaagcagtcttggagtgtggagtggTTATTCTGGTTATTCACAAGCACGTAGCCTAAACCTACTATGTTCTGTATAACTCATCTAAATGCACAATTATTATTCACAATCAGAATCGGTTCCCATTATAGGAAGGGGTGTTCCTGTTCTAGACATTCTATTCCAATGGGGGCACTACAGCAGACAGTAGCGTTTTCTAATGACGAACCAAACAGAAATGAAATGTCTGTGATTCCCTTTAGAAGTGTGCTTTCACTCATGGTGCAGTTGCCATAGATACCCTTGTGGTAAGTGGCTCTGACAGCtgcatctacagtggggcaaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaatatgagagaggcctgtaatgcaGGGCAGGGTGCTGGACTTCAGGTTAGATTTAGGCATCCAACATGTAGGTTCCTGGTTGTTCCATGGTCAGATACTGGTTATTCACAAGCACGTAGCCTAAACCTACTATGTTCTATATAACTCATCTAAATTCACAATTAAAAGTATGATTATGATGATGTATGAATGTAATCAAAATAAGTTCAATATGTGTTATGTTCCCATGTTCATAAAGGGTGAACTTATTTTGCTTGTCTTCAGTTACTGTTAGTGGATACAGTGAGGAAACCGAATATGACCACATCACCAGCATAAAGTGACATAAAACAGGCACCAAGTACAGACAGTGGGGAGGGGGCAGCCAGAAGTAGGGAATTCCAAATGCTGTTTGAGAAAATGGGTTTAGTCTGAGGAACAACTCAGCTGCTCGATTACTGATGTGCCAGAGAAGAGAGGTTGGTGACCTGCATTCCCGGTTGAATGAGTCTTACCTTGCTCCTACTGATCTGTGAGCCATAGATTATAAATTAGCAGCAGGGCTACATCTCACTGTCAGTAGTGTTTCACCTTTATGTCAACTAATGAATTTCCCAAATAATAGGACAATATTACTGCCTGGGGCTAtatctaatctattcaccattcTTTAAAACCCgtattttttttttcactttaAATAACCGCTCACAAGTGGGCATGGCATTAAATAGATAGGCTAAAACACTGCGCAGCAGATGGATTACTTTATTGCGGTGCGGGGTGATGGTACGCGATAACTCAGGTCAGATATCATCGTCAACACTGGGAGAATGGCGCGCTGGACGGCAGACAAATTCAACAAACTCCATGCCATGGTTCGGTGGTCTGCGACCTTCAGATCAGCAATTTGTGCAAACCGGTCGATGAGTGCAGGCTACGAACGTTTAGTTATGGCCACAACATGGCAGAAAATCCAACTGTTCTACCAATGAGTGCTAGACAATAGAAGGGTGGGCCCCAAGCTGATGGCTCAGACAGCCAGTCAACCTCAGCCTGTGCTCATCGTTTACAACTTTGCCATGGTCTGCATGTCTGCCTGCATGTTCTATGAGATGGCCAAGGTCTGCTGGTGGTTTTACTCCTCCAAAGTCATCGAGCACAGTGATATTGTAAGTACACGTTGGGGATGCTACTATCCCGGGTTGAAGCAAAAACGGTGTAAGCCGCACCACTTGGACTATATTTACATCTCTTCTATCAAGACATTTTATGTGCTGTCTATGTGACTAATGTCTGTAAATGTAGCTAACTCCTGAGGATTTGTTTTCGGTATTTCTTGTCATACTCTTGTGTAACTGTCATGTtatttactcaaatatgacatgTCTCTTCCTGGTGTTCTTCATCCAGAGGAAGAAGAACAGTCACTTGACCTTCCTACATGTCTACCGCCACGGCACCATGATCTTCAACTGGTGGGCTGGGGTCAAGTACGTGGCAGGAGTACGTCCCATTCACATCACTACAGCAGGGGCAGTGTTTAATTTAACCGGTGATAGACACAGACAATAATCTCCTGTCTGTAACAGTATGACACTGCACAATCTATTTCTTGTATCTGCTTCTTGCTCGGTTTTGGTTGGAAGAATGATTAAGCTTTTCATACTTGTTCTTCTGGAGATATACAGTGCACACACCCACGCACTGAAATGCACCTGACATTTCAATGAGTCTGGAACACATGCAACCATACCCACATTGTCCTTGGAACTGTTTCCTGTCCCTGCTATTTGAAAAAGACATTTGCCACGGTGAAAGCAGCGGTGATCAAACTAGACTAGCAAGGATTGGAACAGAATGGCAAAGATTAAGACAAGCTTTTGGCACTGAGATGCTCTATAATTTGTTTAAAATGGCGGTGAGTTTGCAGAAAACAGCTGGCAGTGCATTCTTGGTGCAGCATTTGCCCTCTTTTTGGTTTAAAGATAGTAAACACAGCCTGGCTATTTTATTTCACATCGCGTGTCCTAAGACAGACAGATGGGCGGTTAGTCACACTTTGAGATTAAATCAAGACGTTGCTATTCAATATTAAATCCCAGCTTTAGAAACAAGTTAAACACAACTGACCAGTGAATAACTATAAACATACCACGGAAGGAATAGCAAATTCTCTGGGTATTTTgtgtcttcctccctccaggcTTCCTTATAGGCCTTATCAACTCATTGGTGCATGTGGTGATATagactacatggccaaaagtatttggacacctgttcgtcgaacatctcattccaaaatcatgggcattaatatggagttggtccgccatttgctgctataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2419316 lncRNA downstream 54663 20677514 ~ 20737477 (-) False G2115671
TU2419287 lncRNA downstream 101570 20685931 ~ 20690570 (-) True LOC110508717
TU2419315 lncRNA downstream 110320 20678764 ~ 20681820 (-) True G2115671
TU2419271 lncRNA downstream 123178 20654687 ~ 20668962 (-) False G2115635
TU2419273 lncRNA downstream 123178 20654687 ~ 20668962 (-) True G2115635
TU2419465 lncRNA upstream 3666 20803353 ~ 20809150 (-) True LOC110508719
TU2419470 lncRNA upstream 10265 20809952 ~ 20813045 (-) True G2115806
TU2419472 lncRNA upstream 13462 20813149 ~ 20822230 (-) False G2115807
TU2419474 lncRNA upstream 13462 20813149 ~ 20823179 (-) True G2115807
TU2419503 lncRNA upstream 48681 20848368 ~ 20848656 (-) True G2115833
XM_021589462.2 mRNA downstream 61484 20685926 ~ 20730656 (-) False LOC110508717
XM_021589461.2 mRNA downstream 61485 20685926 ~ 20730655 (-) False LOC110508717
XM_021589454.2 mRNA downstream 155049 20629353 ~ 20637091 (-) False LOC110508714
XM_036965895.1 mRNA upstream 3524 20803211 ~ 20807499 (-) False LOC110508719
XM_021589466.2 mRNA upstream 3524 20803211 ~ 20808564 (-) False LOC110508719
XM_021589464.2 mRNA upstream 6065 20805752 ~ 20808573 (-) False LOC110508719
XM_021589468.2 mRNA upstream 16006 20815693 ~ 20840192 (-) False LOC110508720
XM_021589467.2 mRNA upstream 16006 20815693 ~ 20840193 (-) False LOC110508720
TU2417253 other downstream 1670084 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1782475 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1783643 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1825661 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 59453 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1070998 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1073529 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1143294 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1143294 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile