RNA id: TCONS_00055400


Basic Information

Item Value
RNA id TCONS_00055400
length 2498
RNA type mRNA
GC content 0.49
exon number 22
gene id XLOC_028555
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10766014 ~ 10835620 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGAAGCAAGGTAATCATGATGTGTGATGCCAGTGAAATGTTGGCAGCTGCTCTGGAGCAGATGGATGGCATCATTGCAGGTTCTAAGGCCATGACCTACACCAATGGTCTGTTTGATTGTCAGTCACCAACTTCACCCTTTCTGGGCAGCATTCGAGCGCTGCATCTCCTGGAGGACCTGAGGGCTGCGCTGGACTTAATGGATCCTGAGGAAAAGGAAAATATGCGCAGTCAAGTGTCTGAAACCACAGCCGAGGGTCTGATGGAGTGGCTACAAGGCAGATTGACCAATGGCCATGGATCTGCAGCAGGGGATTTGGTCCACCAGGAGCGACTCTCTCGCTTGGAAAGTGACAAAGAATGTTTAGTGCTCCAGGTAAGTGTTCTGACTGACCAAGTGGAAGTCCAAGGAGAAAAAATAAGGGACCTAGACTCGAGCCTTGAGGAACATCACATGAAACTGAACGCTACAGAAGAGTTACTACAGCAAGAGCTGCTTAGCAGGAGTACTTTAGAGGCAGAGAAACTGGAACTGTTGACCGAGATATCGAGTCTGAAGCTGAAGCTAGCTGCTGCAGAAGGAGATTGCAGAGAATGTGAGGGTCTTTTTCAGGATGTGAAAGACTTGCGCCTCAAGTTGACATCCATGGAGAACGAGAGACAACACTATGAGAGAAGCCTCATCTCAACTAAAGAGGAGCTGATATCACTACAGAAACAGCTGGAGGAGAGAGAACAGGCATTTAAAAGAATTCAAGACCGAGGCGTCCCAGAAACCTTAAACACTGAACAGTCACAAAGCAAAGAGAGAGATGTGGAGGTGCAGAGATTGAGGAGTGCGATGGAGTCTCTGAAGGCGACTAATGAAGAGAAGGATTTCAGGATAAAAGAGCTGCAGCAGTCTTTGATCCATTACAGGCGGGTTCAAGATATAGGGAAAACTGTGCATGTGTTAAAAGACAACCTCAGTGACGAGGACACAAGAGAAGGGCTGTGTGACTCTGAGATGCTCTCCACTGGAGGAACAGAGGAAACTGATGAACCTCAGCTCATTCCATGTTCAGAGCTGCTGCCTGAAGTCCCACATACACCCACAGACAGCTCAGGGAGAAATGAGAGTTTTGGCAGTAAGAAAACTCGCTCCTCTTTTGGACGTGGCTTTTTCAAGATCAGAGGGAACAAGATGACAGGCAGCGCTCCCAGTCTAGCTGAGGGAGAGCAGAAGGGGACGGAGCACTTGGATTTGGCCGGAGTGCAAACTAAGAAGCAGAAAGCATTGGACACACACTCACCTGATGGGAAGAAGAAATCAAAGGGCATCATGAAGTTATTTGGAAgGATGAAGAGAAGTCAGTCCACCTCCTCTGACCTGGATGATTCTCCAGACTCTGAGTTTCAGAGAGGTGGAGTTCGAGCCACAGCGGGACCCAGACTGGGCTGGTCACGTGATCTGCAGAGGAGCAATAACAATGAGCTCAACAGTGCATTTTCCCGCTGGAGTAAAGAGCAGGTGTGTGAGTGGCTGCAGGAACAGGGACTGGGCTTATATATGAATCAGGCCCAGCAGTGGATTAAATCTGGACACACTTTACTGAAGGCGTCTCAGCATGATTGGGAAAAGGAACTGGGCATCAGGCATCCTCTACACAGAAAGAAACTGCAGCTGGCTCTTCAGTCGCTCAGCTCAGAGGACGGAGATGCTATGGGCAAACTGGACTACAACTGGGTTACTCAATGGCTGGATGATATCGGCCTGCCCCAGTATAAATCTCAGTTTGATGAGGGCAGAGTGGATGGACGCATGCTTCACTACATGACTGTGGATGACCTGCTGGGTCTGAAAGTTGGCAGTGTGCTTCACCATCTCAGTATAAAGAGGGCCATCCAGGTTTTACGCCTCAACGGCTACGACCCAAACTGTCTGCGCCGTCGACCAATAGAGaacaaCGCCACACCAGCTGAAATCTGTCAGTGGACCAATCACAGAGTGATGGAGTGGCTGCGTTCAGTGGATCTGGCAGAGTACGCCCCCAACCTGAGAGGAAGTGGAGTCCACGGAGGCCTAATGGTTTTGGAGCCCCGCTTCAATGTTGAGACGATGGCCCTGCTTCTTAACATCCCACCAAATAAGACGCTGTTGAGACGTCACCTTGCGACCCACTTCCATCTTCTGATTGGTTCGGAGGCACAGAAACAGAAGCAGGAGTATCTGGAAAACCCTGATTACACTGTGCTCACAGCCACAGCCAGAGTAAAGGCACCCAAGAAGACTGTCATTCGGAAGTTTTGGGACACTGAGACGAAAGAGGCAAGAGGATATGGAGGAGTATGTTTGCCCTATGGATCTTTGAATGTTGACTGATCTGCTCATGTATTCCAGAGAGCTGTGTATATGTTAAATATTGTACATGATGTTATGCATCTCTGTGCAGATGGAAGACTCTGAGGGTACAGTGCGACAGATCGGCGCTTTCTCAGAGGAAATCAACAACCTGA

Function

GO:

id name namespace
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041210-298 Predicted to be involved in neuromuscular junction development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP1 (PPFIA binding protein 1).

Ensembl:

ensembl_id ENSDART00000067256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058100 lncRNA downstream 1623 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055395 lncRNA downstream 1674 10790960 ~ 10812236 (-) False XLOC_028555
TCONS_00055396 lncRNA downstream 1736 10791967 ~ 10812174 (-) False XLOC_028555
TCONS_00055397 lncRNA downstream 16948 10793666 ~ 10796962 (-) False XLOC_028555
TCONS_00058099 lncRNA downstream 20857 10788536 ~ 10793053 (-) False XLOC_028555
TCONS_00055415 lncRNA upstream 298038 11124613 ~ 11125166 (-) False XLOC_028568
TCONS_00055416 lncRNA upstream 298038 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00055421 lncRNA upstream 352934 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055422 lncRNA upstream 418757 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055426 lncRNA upstream 576116 11402691 ~ 11404177 (-) True XLOC_028572
TCONS_00055388 mRNA downstream 214848 10574822 ~ 10599062 (-) True XLOC_028552
TCONS_00055386 mRNA downstream 904539 9901116 ~ 9909371 (-) False XLOC_028550
TCONS_00055385 mRNA downstream 922036 9880647 ~ 9891874 (-) True XLOC_028549
TCONS_00055383 mRNA downstream 946125 9854075 ~ 9867785 (-) False XLOC_028548
TCONS_00055401 mRNA upstream 99596 10926171 ~ 10931729 (-) True XLOC_028557
TCONS_00055402 mRNA upstream 122814 10949389 ~ 10958074 (-) True XLOC_028558
TCONS_00055403 mRNA upstream 132867 10959442 ~ 10973413 (-) False XLOC_028559
TCONS_00055404 mRNA upstream 139467 10966042 ~ 10972912 (-) False XLOC_028559
TCONS_00055405 mRNA upstream 146010 10972585 ~ 11024844 (-) False XLOC_028559
TCONS_00055389 other downstream 152233 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2226002 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2672444 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 2937980 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 2938150 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 780183 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 781621 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1448539 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1586844 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1769105 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile

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