RNA id: XR_005040285.1


Basic Information

Item Value
RNA id XR_005040285.1
length 2225
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110508730
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21522859 ~ 21531316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagtgGAATTACGTTTGTTGTCACGGTCACATGCTCAAGTCAACCTCGATCAGCTGACTGTATCCCTTCCCTTTTGATGGATAGAGTTCCCTTCTTCAGTTGAAAGATTTTGGGGTTATTCAGACCGTTCGACGTCAATTGTAAAGACAAAACTGAAGGTAGCATAGTGCGATAGTCCGGAAAATATCGCGGTTTGGGTGATCATGAACGGACACGCCATTCTCTACACCGGGGTCACTTTGGCCTTCTGGAGTACCATTCTCATCGTCGGTATTTGTTACACGATCTTCGACCTTGGATTCCGCTTTGATGTGGCATGGTTTTTGACAGAAACCTCGCCCTTCATGTGGGCGAACCTTGGAATTGGCTTGgccatctccctctctgttgttggAGCTGCTTGGGGCATTTACATCACAGGTTCCAGCATCATAGGAGGTGGTGTAAAAGCACCACGGATTAAAACAAAGAATCTGGTCAGCATTATCTTCTGTGAGGCTGTAGCCATCTATGGGATCATCATGGCGATCGTTATAAGTAACATGGCTGAGAGTTTTAGTGGCACCACACCAGAGACCATTGGGGCAAGGAACTACCAAGCAGGCTACTCTATGTTTGGCGCTGGTCTTACTGTGGGATTCTCCAACCTCTTCTGTGGCATCTGTGTTGGCATCGTTGGTAGTGGGGCCGCCCTGGCAGATGCTCAGAATGGCAGCCTCTTTGTTAAAATCCTTATTGTGGAAATCTTCGGCAGTGCAATTGGGCTATTTGGAGTGATTGTGGCCATCTTGCAGACGTCGAAAGTAAAAATGGGTGACTAGAAGATTCATCTTCAATATGACAAGATCAATGGAAGACAAAGCTGGACAAGCAGATGGATTGTTTTCAGTTACGGTATATTTTTCCATGACTGGTGTGAGTAACCTTTTTCTGCAGTAACACAGAATGAATCAATATGTGTCTGTAATCCCCTGTAAACTATCCATCTGTGGAGAGTGAAATGTAGATGTTTTCCTCAAGACCAGTTATCCGCGTCAGTGTTTCCCCCTTTATCCGTTTAGCAGCGGCGCACCGTAGAGATTTTATAATGTAGATATATATACCCCAAGACGACACCCTGCTCCCACTACCTCTGCCACCGCTGCTGAAGACCCCAACCCATTACTTCTGCCACCACTGCTGAAAAATCTTAGGGGAAACGCTGCATGTACATTTTCTGCTTTTCTTccagttttttttgttgtaattttGAGTTTAAATGATCTGAGCTCCTTGTCTTTCCACTGCTGTGAATGGGCTGATATGCATACTCTTTTGGAGAGATGGTACTCGAACAGAACATCGATAAGAACTTTCTCAGACCAGTTGGCCTTTTACTTAGTTGTGATTTTGTTTGtctttagttttttttaaattttatctAATGAATTACAATTAGCTTGAGCCCTTAAATTAAAATTAACCCTAGAGTCTGACTTCCATTTTAATGTTCATAACATCCAACTTGCTGTGACCAtgtgtttgtcccaaatggcatcctatttcttACGTAGTGTACTGCATTTGACCTGAGCCCtttgggccctgatcaaaagtagtgcattataagaaatcgggttccatttgggatgcatttgaCTGTATACTTATGGGGGTCTCCAACTGAGTGTTCCATCCTGTCCTCACCAACCGTACATGTATAGTAttattgttttaaaaaatgtatgtaaaagtTAATGGTATTTATCCATGGAGATGAAAGATCGTTTGGCTGATCCCTATGGCAAAAGGCCCAAAAAGATAATTTGAAATAGTATTTGGCATGGGTTTCATACAATGATTCAGCTTTGTTCATTACTTTTGAGCATTTCTAAATGGACCTTTGGTGTAATACTGGGTTGGCCATCCTGGTCTTGGAAGAGCCTCAGTGCTGAAGGGTTTAACTTGAATGGATAACATTTGGATTGAAAGTCCAACTTGTTGGTTTAAAAGTATGCTGCTTGAAAGATGGCCAATGGCTTACATTGAGGCCCTCTAGGTCCTTGGTTGGCTgcctattgtagtggtgtcatTCCTAATGTAAAGGAAGATTTCTAGATCATACTTCAGTGAGTGTTTAATATGTTGATGTGGTAAATCCATTGTTTTGACATGTAAAAGTGGGTCCTCTTTACTTCATAATTGTCCTTGAAAGAATAAAATATTCCAACCTGATCGTTCAA

Function

GO:

id name namespace
GO:0048066 developmental pigmentation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K03661 ATPeV0B, ATP6F; V-type H+-transporting ATPase 21kDa proteolipid subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420475 lncRNA downstream 15225 21489925 ~ 21507634 (-) True G2116760
TU2420453 lncRNA downstream 37544 21467396 ~ 21485315 (-) True G2116739
TU2420381 lncRNA downstream 162583 21360069 ~ 21360276 (-) True G2116669
TU2420380 lncRNA downstream 165088 21357490 ~ 21357771 (-) True G2116668
TU2420373 lncRNA downstream 170990 21351652 ~ 21351869 (-) True LOC110508727
TU2420508 lncRNA upstream 14009 21545325 ~ 21547940 (-) False LOC110508732
TU2420509 lncRNA upstream 15541 21546857 ~ 21547940 (-) True LOC110508732
TU2420538 lncRNA upstream 51038 21582354 ~ 21616449 (-) True G2116818
TU2420571 lncRNA upstream 99550 21630866 ~ 21632511 (-) False G2116849
TU2420572 lncRNA upstream 102598 21633914 ~ 21640332 (-) False G2116849
XM_021589482.2 mRNA downstream 950 21376698 ~ 21521909 (-) True LOC110508729
XR_005040291.1 mRNA downstream 154758 21351666 ~ 21368101 (-) False LOC110508727
XM_021589469.2 mRNA downstream 682665 20815693 ~ 20840194 (-) False LOC110508720
XM_036966509.1 mRNA downstream 682665 20815693 ~ 20840194 (-) True LOC110508720
XM_021589467.2 mRNA downstream 682666 20815693 ~ 20840193 (-) False LOC110508720
XR_002471355.2 mRNA upstream 13924 21545240 ~ 21547961 (-) False LOC110508732
XM_021589492.2 mRNA upstream 134092 21665408 ~ 21700959 (-) False LOC110508734
XM_021589493.2 mRNA upstream 176066 21707382 ~ 21752831 (-) False eif2b3
XM_036966443.1 mRNA upstream 176066 21707382 ~ 21753569 (-) False eif2b3
XM_036966444.1 mRNA upstream 176066 21707382 ~ 21781228 (-) False eif2b3
TU2419508 other downstream 663329 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2400803 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2513194 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2514362 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2563027 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 339369 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 341900 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 411665 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 411665 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 411665 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile