RNA id: TU2420508


Basic Information

Item Value
RNA id TU2420508
length 1116
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC110508732
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21545240 ~ 21547961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAATCGTCCACATGGTTGGCTGCATTTTGCTACCACCGGAAAGAACTTGAAGAATGCCCATTATTTCGTTTTTGTAAGGACACAGAAAACGGACGCAGAGAGAGAACGTATTcaaatacagagctgtgaaaccctgtctgcagatgaagagGTCCCAATGAACGTCCCAAGAGAATAAGGGTGGTGAAACGTCTGGAAGTAGGAGATGATGGGATCCTTCTCTTCAAACATACAACTACTACCACCAAGTTCAATGCCAGATACTTTTCTCCCAGAAGGTCTGAGTGGCACTTGGAGGTGCCACTGTGATAATGAAGATGGTTTGCCAAAGACTACCACAACAGTTACATGGTCTATGCTTAATGTGTTTAAATTGTAAATGAGAAAAAATAGTTGGGCTATAAGAAATACTTTTTTATTCAATGGGGCTAGGCAAAGCAGAGATGACATTACTTTTGTATTTCACCCATATACTAGCTAGCCTATTATTAAAGTACAGTATGTTTACAATATCATAAGCAATAGTATTTTACACGttccaaatatttttttaaatgttcataCGGTTTAAGGGGGCACTTTTATCATGACGACAAggtgaaaggttgctagatcgaatctccgagctgacaaggtaaaaatatgtcgttctccccctgaacaaggcagttcctaggccgtcattgtaaataagaatttgttcttaactggcttccCTAGTTAAAACAGGTGCTCTTTTCAAATTGCACAACAGAAGCATTCAGATTGACCAAAGCACAGCATATAACTACCATCTCATATAACTGAGGGATGTCTCTTTTCATATCTGGAAAAGGACAAAGTAGTAGAAGTAGAAACTGCTGCTGCAGTACTGCTCATCTTCACAGTGGGAATCCAGTTGACATGGGTGTCTTGATAGAGGTCAGCTGGTGAACCTACAGTACATAAAACAAATGAGAAGCACACCAGATGTTAGAATAGCACTTCTTCGGGTCACCTATACCACCAGGGCTCTTAAATTGTTTGGTTGTGTTTAATTCATTCTGGGGTTTTAGTATCATATAAAGATAATCTATTGTTGACCTGGAACACACAATAGTCAACACAGCAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420475 lncRNA downstream 37691 21489925 ~ 21507634 (-) True G2116760
TU2420453 lncRNA downstream 60010 21467396 ~ 21485315 (-) True G2116739
TU2420381 lncRNA downstream 185049 21360069 ~ 21360276 (-) True G2116669
TU2420380 lncRNA downstream 187554 21357490 ~ 21357771 (-) True G2116668
TU2420373 lncRNA downstream 193456 21351652 ~ 21351869 (-) True LOC110508727
TU2420538 lncRNA upstream 34414 21582354 ~ 21616449 (-) True G2116818
TU2420571 lncRNA upstream 82926 21630866 ~ 21632511 (-) False G2116849
TU2420572 lncRNA upstream 85974 21633914 ~ 21640332 (-) False G2116849
TU2420573 lncRNA upstream 85974 21633914 ~ 21636282 (-) True G2116849
TU2420592 lncRNA upstream 117480 21665420 ~ 21665702 (-) False LOC110508734
XR_002471354.2 mRNA downstream 14009 21522859 ~ 21531316 (-) False LOC110508730
XR_005040281.1 mRNA downstream 14009 21522859 ~ 21531316 (-) False LOC110508730
XR_005040284.1 mRNA downstream 14009 21522859 ~ 21531316 (-) False LOC110508730
XR_005040285.1 mRNA downstream 14009 21522859 ~ 21531316 (-) True LOC110508730
XM_021589483.2 mRNA downstream 14011 21522859 ~ 21531314 (-) False LOC110508730
XM_021589492.2 mRNA upstream 117468 21665408 ~ 21700959 (-) False LOC110508734
XM_021589493.2 mRNA upstream 159442 21707382 ~ 21752831 (-) False eif2b3
XM_036966443.1 mRNA upstream 159442 21707382 ~ 21753569 (-) False eif2b3
XM_036966444.1 mRNA upstream 159442 21707382 ~ 21781228 (-) False eif2b3
XM_021589494.2 mRNA upstream 159442 21707382 ~ 21785903 (-) True eif2b3
TU2419508 other downstream 685795 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2423269 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2535660 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2536828 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2585493 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 322745 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 325276 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 395041 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 395041 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 395041 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile