Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU2420591 |
| length | 1369 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 1 |
| gene id | LOC110508734 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 21665408 ~ 21700959 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0007224 | smoothened signaling pathway | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0009954 | proximal/distal pattern formation | biological_process |
| GO:0048635 | negative regulation of muscle organ development | biological_process |
| GO:0010002 | cardioblast differentiation | biological_process |
| GO:0001649 | osteoblast differentiation | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008158 | hedgehog receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2420592 | lncRNA | downstream | 266 | 21665420 ~ 21665702 (-) | False | LOC110508734 |
| TU2420572 | lncRNA | downstream | 25636 | 21633914 ~ 21640332 (-) | False | G2116849 |
| TU2420573 | lncRNA | downstream | 29686 | 21633914 ~ 21636282 (-) | True | G2116849 |
| TU2420571 | lncRNA | downstream | 33457 | 21630866 ~ 21632511 (-) | False | G2116849 |
| TU2420538 | lncRNA | downstream | 49519 | 21582354 ~ 21616449 (-) | True | G2116818 |
| TU2420599 | lncRNA | upstream | 15515 | 21682851 ~ 21683143 (-) | True | G2116873 |
| TU2420603 | lncRNA | upstream | 22660 | 21689996 ~ 21690248 (-) | True | G2116877 |
| TU2420610 | lncRNA | upstream | 31321 | 21698657 ~ 21698863 (-) | True | G2116884 |
| TU2420615 | lncRNA | upstream | 36069 | 21703405 ~ 21703615 (-) | True | G2116889 |
| TU2420618 | lncRNA | upstream | 38098 | 21705434 ~ 21705669 (-) | True | G2116892 |
| XR_002471355.2 | mRNA | downstream | 118007 | 21545240 ~ 21547961 (-) | False | LOC110508732 |
| XR_002471354.2 | mRNA | downstream | 134652 | 21522859 ~ 21531316 (-) | False | LOC110508730 |
| XM_021589493.2 | mRNA | upstream | 40046 | 21707382 ~ 21752831 (-) | False | eif2b3 |
| XM_036966443.1 | mRNA | upstream | 40046 | 21707382 ~ 21753569 (-) | False | eif2b3 |
| XM_036966444.1 | mRNA | upstream | 40046 | 21707382 ~ 21781228 (-) | False | eif2b3 |
| XM_021589494.2 | mRNA | upstream | 40046 | 21707382 ~ 21785903 (-) | True | eif2b3 |
| XM_021589495.2 | mRNA | upstream | 185576 | 21852912 ~ 21862431 (-) | True | plk3 |
| TU2419508 | other | downstream | 806438 | 20859140 ~ 20859530 (-) | True | G2115838 |
| TU2417253 | other | downstream | 2543912 | 19116090 ~ 19122056 (-) | True | LOC110508678 |
| TU2416904 | other | downstream | 2656303 | 19007232 ~ 19009665 (-) | False | G2113520 |
| TU2416913 | other | downstream | 2657471 | 19007232 ~ 19008497 (-) | False | G2113520 |
| TU2416849 | other | downstream | 2706136 | 18958110 ~ 18959832 (-) | True | LOC118944847 |
| TU2421079 | other | upstream | 203349 | 21870685 ~ 21871053 (-) | True | G2117313 |
| TU2421081 | other | upstream | 205880 | 21873216 ~ 21876650 (-) | True | mrps14 |
| TU2421094 | other | upstream | 275645 | 21942981 ~ 21948258 (-) | False | LOC110508740 |
| TU2421095 | other | upstream | 275645 | 21942981 ~ 21948258 (-) | False | LOC110508740 |
| TU2421096 | other | upstream | 275645 | 21942981 ~ 21948258 (-) | False | LOC110508740 |
