RNA id: XM_021589493.2


Basic Information

Item Value
RNA id XM_021589493.2
length 1863
RNA type mRNA
GC content 0.50
exon number 12
gene id eif2b3
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21707382 ~ 21785903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCTCTAGTTTACTCCCGGAGTGATTTCATCAATGGTAGCAAAGTGTCATCATACAAGCTAGCATGCCGCTAGTCAGTTTAGCGAACTGTCTCtaatattgttttattatttcactaAAAGTTATTACCACGTATCGGTGAAGGTCTTTACATATTAAAATAGCATCACGATATTTTGTATCTCGGTTGAGGCTGTTGAACTTTTCAGGATTAAGAACTCTTGGTTAGCTAGCTCGTAAACAGTTGACTGTACAGCACTGTCATTTGGGTGACAAGCGTGTTGCTGCTGAATAAACCAGCTGACGTTATCGAATAGGTGTATAACAGCAGATGGAGCTGCAGGCGGTATTGATGGCTGCTGGTGGTGGGTCTCGTATGATGGACCTAACCTACAACACCCCCAAACCTCTGCTACCTGTAGGAAACAAGCCCCTCATCTGGTACCCCCTCAACCTGCTGGAGAGAGTGGGGTTTGAAGAGGTAATTGTTATCACAACCAAAGAGGTGCAGAAGATGATCAGCACAGACCCCAAGGTGAAGCTGGATGTGAAGATGAAGTTAGACTTGGTGTGTATCCAGGAGGATGCTGACATGGGCACCGCCGACGCCCTCAGGCACATCCAGCAGAAAGTCAAGACGGACGTCTTGGTGGTGAGCTGTGACCTGATAACGGACGCTGCCCTCCACGAGGTGGTCGACCTGTTCCGAGCCCACAACGCTACCCTCTCCATGCTGATGAGCAAAGCCCACGAGTTCACCGAGACTGTTCCCGGACAGAAGGGCAAGAAAAAAACCGGGGAGCAAAGGGACTTTGTCGGGGTGGATGGTACAGGAAAGAGGCTCCTCTTTATGGCCAACGAGGCCGACCTGGACGAAGGTGTGGTCATCAGGAAGTCCATCATGAGAAAaCATCCAAGGATGCACATCAAAACTGGCCTTGTGGACGCCCACCTGTACTGCCTGAAGAAGTCTGTGGTCGACTTCCTCGCTGATAACAAATCAATCTCTTCGATTCGGGGAGAGTTAGTCCCATATCTGGTCCGCAAACAGTTCTCTAAATCCACCAACTCTCCGAAGGTCATCGATGAAACTCATCAGAACCTAAAGAAAAACGATAGTAATGTAAACTTAGAGATCCAGATCTCATCCAGGGATGAGGAGCTGCTGCATCTAACCCAGGAGAGGTCCTGTTGGAATGACCACCGTGGGGACATGAGCGATGCCTACCACGGAGGACGCCTGCGCTGCTACGTGCACATCATGGACGAGGGAATATGTTACCGAGTCAACACGCTAGCGGCCTACATCGAAGCCAATCGCCTGGCCCCTAAGCTGTTTGACGAGCCTGCAGTCCATCCATCAGCAGTGGTCTCTGAGCGTTGTCTGATTGGTGCAGACAGCATAATAGGAGCTTCCTGTCAGATCTCAGACAAGACATCCATCAAGAGATCGACGATCGGAGTGTCCACCACTGTCAGGGAGAAGGTCAAAGTAACCAACTCCATCATCATGCATGGAGTCACCATCGAGGAGGGGTGTAACATCCAGGGCAGTGTGATCTGCAGTAATGCTGTGATTGGCCGAGGTGCAGACATCAAATACTGCCTGGTGGGGAGTGCCCAGCGCATAGAGCCAGATGCTGAAAGGACTAACGAGGTGATCGTTGGAACTGACCAGCTGATGGAGATCTAGACAAGGGGGAAGACTGACCGATGGGAACAACGCCTTATTGACCGATCCAACAGACCAGAGCAGTGAGGCAAACTAACTGACCACCAGGCAGTTCCACACATCACCCCACCATCTCCattgtctttttttttacattgtgtcCAAATAAAAGCAATTTTATTTATCCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420618 lncRNA downstream 1713 21705434 ~ 21705669 (-) True G2116892
TU2420615 lncRNA downstream 3767 21703405 ~ 21703615 (-) True G2116889
TU2420610 lncRNA downstream 8519 21698657 ~ 21698863 (-) True G2116884
TU2420603 lncRNA downstream 17134 21689996 ~ 21690248 (-) True G2116877
TU2420599 lncRNA downstream 24239 21682851 ~ 21683143 (-) True G2116873
TU2420709 lncRNA upstream 15953 21768784 ~ 21768998 (-) True G2116982
TU2420729 lncRNA upstream 30697 21783528 ~ 21783798 (-) True G2117001
TU2420743 lncRNA upstream 40139 21792970 ~ 21793230 (-) True G2117015
TU2420745 lncRNA upstream 41687 21794518 ~ 21794761 (-) True G2117017
TU2421077 lncRNA upstream 115973 21868804 ~ 21869335 (-) True G2117311
XM_021589492.2 mRNA downstream 6423 21665408 ~ 21700959 (-) False LOC110508734
XR_002471355.2 mRNA downstream 159421 21545240 ~ 21547961 (-) False LOC110508732
XR_002471354.2 mRNA downstream 176066 21522859 ~ 21531316 (-) False LOC110508730
XM_021589495.2 mRNA upstream 100081 21852912 ~ 21862431 (-) True plk3
XM_021589497.2 mRNA upstream 111783 21864614 ~ 21867035 (-) True LOC110508737
XM_021589498.2 mRNA upstream 120385 21873216 ~ 21876709 (-) False mrps14
XM_021589502.2 mRNA upstream 191978 21944809 ~ 21948308 (-) False LOC110508740
XM_021589503.2 mRNA upstream 191978 21944809 ~ 21948557 (-) False LOC110508740
TU2419508 other downstream 847852 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2585326 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2697717 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2698885 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2747550 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 117854 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 120385 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 190150 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 190150 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 190150 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile