RNA id: TU2421081



Basic Information


Item Value
RNA id TU2421081
length 770
RNA type TUCP
GC content 0.46
exon number 3
gene id mrps14
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21873216 ~ 21876709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAAGAAGACGCAATTGTCAAGATGGCGGCGGCCTGTAGGACTGCACTTGCGGGGTTAAATGTTTTTCACTCCTCCTTTTGTACACCTAAACAGACTCTGAGAAGCTGCTGGAGTGTGGTGGAGCAAGTCAGAGGGTACTATGTTGACTGGAGAATGCTACGCGACGTGAAGAGAAGGCAGATGGCCTTTGACTATGCAGATGAAAGACTACGGATCAATGCACTAAGGAAGAACACTGTTCTCCCCAAGGAGCTTCAGGATGTTGCCGATAAAGAAATCGCCGCGCTACCACGTGACAGCTGTCCAGTACGAATCCGGAATAGATGTGTGATGACCTCACGGCCGCGGGGCGTCAAGCGCAGGTGGCGTCTCAGTCGCATAGTCTTCCGTCACCTGGCGGACCACAACCAGATGTCTGGAATACAGCGGGCCATGTGGTGATTTTATTTATCTcaatgatgtagtggtaaaaaataATGATAATAGGTGGTCATCGTTTGCAGTGAGTAAAGTAATGGTCCCTAAACCTGCAGAAGACGGGTAAACACTCGTGCAAAATATAAAAGCATTTACGTGCATTTATCCTCTACTACACTACTGGTGATTAGGGTTAGTCATTGTCGGGCGACCGGACCAACACAGTACACTATGCTGTGAACTCTGTTTTTCTTTTCCACACCACTTTGAATTATGTTAATTGAAGGTTGCAACTGACAGCTTAAAGGTGTCAACTGTATTAAAACAAATAAAAGGATGTATGTTTGAATC

Function


GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2421082 lncRNA downstream 234 21872618 ~ 21872982 (-) True G2117316
TU2421080 lncRNA downstream 1379 21871475 ~ 21871837 (-) True G2117314
TU2421077 lncRNA downstream 3881 21868804 ~ 21869335 (-) True G2117311
TU2420745 lncRNA downstream 78455 21794518 ~ 21794761 (-) True G2117017
TU2420743 lncRNA downstream 79986 21792970 ~ 21793230 (-) True G2117015
TU2421131 lncRNA upstream 41483 21918133 ~ 21921268 (-) False G2117349
TU2421137 lncRNA upstream 41483 21918133 ~ 21922635 (-) False G2117349
TU2421123 lncRNA upstream 42882 21919532 ~ 21921268 (-) False G2117349
TU2421140 lncRNA upstream 42882 21919532 ~ 21922635 (-) True G2117349
TU2421150 lncRNA upstream 50909 21927559 ~ 21929837 (-) True G2117357
XM_021589497.2 mRNA downstream 6181 21864614 ~ 21867035 (-) True LOC110508737
XM_021589495.2 mRNA downstream 10785 21852912 ~ 21862431 (-) True plk3
XM_021589494.2 mRNA downstream 87313 21707382 ~ 21785903 (-) True eif2b3
XM_036966444.1 mRNA downstream 91988 21707382 ~ 21781228 (-) False eif2b3
XM_036966443.1 mRNA downstream 119647 21707382 ~ 21753569 (-) False eif2b3
XM_021589502.2 mRNA upstream 68159 21944809 ~ 21948308 (-) False LOC110508740
XM_021589503.2 mRNA upstream 68159 21944809 ~ 21948557 (-) False LOC110508740
XM_021589504.2 mRNA upstream 68159 21944809 ~ 21948557 (-) False LOC110508740
XM_021589505.2 mRNA upstream 89645 21966295 ~ 22125301 (-) False tnr
XM_021589506.2 mRNA upstream 89645 21966295 ~ 22125301 (-) False tnr
TU2421079 other downstream 2163 21870685 ~ 21871053 (-) True G2117313
TU2419508 other downstream 1013686 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2751160 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2863551 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2864719 19007232 ~ 19008497 (-) False G2113520
TU2421094 other upstream 66331 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 66331 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 66331 21942981 ~ 21948258 (-) False LOC110508740
TU2421097 other upstream 66331 21942981 ~ 21948258 (-) False LOC110508740
TU2421093 other upstream 68257 21944907 ~ 21948258 (-) True LOC110508740

Expression Profile


TU2421081 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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TU2421081 Expression in each Bioproject

Bar chart with 20 bars.
TU2421081 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.