RNA id: TU2421095


Basic Information

Item Value
RNA id TU2421095
length 3096
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110508740
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21942981 ~ 21948557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCGAGTACAGACAGAGGGCCCTTTCTTTCACAGGGTATGCAGGGCAGGGAGAAGGGACGCTGCACTGAGAGAGTGACACACACGggcagagagaggtaaagagatacAGGCACAAAGAGCACAGTTCAATACATACCAAGTATGGGGCAACATTGAGAGCTTAGAGATTATCAACAAAAAGCAGGATTtacaaggaagaggagagggaaaaaaCAGCTTTACTGGCCCGGACTTCTAAAACCTTTTGCCGAAAATGTCCTCATTCCATCACTTCTCCCAGAGGAGAATGGATTAAAATAGAGAGGAGACTCCAGAGGACGTGAGGTGGGATCCCAAATCCCAAAAgaggaaacaaacaaacaacacaaacaggCAGACTTCATAGACTTTCCCATCAAGGCAAGGAGAGATCGGAATCATTACAGCAACTGAAGGATTACAAAGGAAAACCCCCCCTCTCTCATAAACAATTGATCTTTGGACttcaaactttcataaaaaatGCGTTTGTCTTCAAACCCCCAGATAAGGCGGttaaggaaggaggggaggataaAGAGATTCTCCCTGCATCAAGGATTTTTCTAGTCTGTCCCATCCTCCCTTTCCTTCATCAGATATTCATTGTGACTGGGATGTCCTACTATATCAGCGAAATCTTCAATGTCATGAGTTCACCAGGAAACTGAAACCAGCACTAGATCAGGGTCAAATCACCACAAGAACAATCCCCTGATAACAGCAACACCCTTGCTGACTACTTCAATCAGAACGTGTTCACTATTGTAATTGGTTTCTTCTTCAAAGATTACCCTCAAGAGGAATTGTTAAGACACTGTCAGTGAACAATGAAGGAAGACATCTTGGATTTTTTCAGTGACTTGTGGAAGGTGGCCACCACTAAGCATGACCAGGGGATCTATAACACAGTCTGCCTGGTGGTGCTGCTAGCCCTGCCTATGGTGGTGCTCTTCACTTCTCTGGTGGTGTgctgccactgctgctgctgtcgcCACGCCAACTGCGCTGGTTGCTGTGCAGTCAGCCCCAGCTCAGCCTTAGCAAAATCAGACAAAAATAAGAAGAGTCCGAAAGATGAGGACTTGTGGATCTCGGTCAAAACAGGACCTATGACACCAGATAGGGTTGCCCTGACGATGGTGTAAGGTTCAGATAAGGTTTTATCCTTTTGTATTCATGTGAAGCTCTTTTTTACTGCAAGGTACAGGTACATGATGCCGAGCACTGGTGTTCAATATGCTCGACAGAAACGGTTGAAAGACAGTAAAAGAGCCAACGAtacgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcttctatCCATGTTGGGACCTAAAATCCCCAAAAGTCCCCACAACGATAGTAAAACAAGTCAAATTCCCATGTCCTCATTAGGACAAAGACtattgggttaggtttagggttagaattagggttagggtaagggattaggtttaggtttaggagtAAGGTTTGGGTCAGGGttacaggttaaggttagggaaaataggattttgaatggaaatcaaattttAGGTCCCCATAAGGATAGAAGaacaaaacgtgtgtgtgtgcgtgtgtgcgcgtgtgcttgcatacgtgggtgtgtgcgtgtgcatgagcaaatgtgtgtatgtgcaagGAAGAGTGATAGATGACACAtggtgtatgtgttagtgtgcACTTCTGTGTGAAATTCACTGTCTTCACATTTGGGGACTATTTATATTTCCAATGCTGGAGGCCAGCAATCTAGTATTGGGATTCAGTTAGAAGACTATTTTTAATGGGTTAGACCATTTTAAGTTCAAAGCACTTGCAGTTATTGCACTTACAACAGAAATTTGTGTAACTACTTTGAAATATTTTGCTGTACTTGCTATACCCACTGAATGGAGATCTTAATTCCATTTATGAGTTAATTATCAAGCGCAGAATTTAATAGAACCAAGTGAAGCACTCAGATCTTTCAATTGCATTGCTCAATGTATAGGTTTCTTTCCCCGTAGAGTATCCTACATACAGCAGCTAGTATTGTtgataaaaaaatgtatctaACAGTTCCGTGTTTTACTCTGCCTTATGCTCAGATTGATGACACAGATTCATGTTTACTGTCTTGCACTATCCCTATTGGTTCATAATATCATTATGCATGGACACCAGGCTCTCAGATGTATGGGGCGCTGAGTGGATCCTTCTTATATCCTCATCCCTCAGTGCCAATGTAGCCCTCTGACTTAAAATAATAGTTATTCTATCTCAAAACTGGGATTCCTAAAAAATGTGTCCGAAGATTTGGTCAACTTCTGTCAGATGTTTAAAATCCTAAATGAATCAGGAGTGGGCAGGGTCAGCTATAACATAAGGACCCCTTATTCATTCTCTCATTACATGTAGCGTAGCAAGACCACTCATGGTCTGTAAAGTTCTCTACTTTTGATAGATTTAAACAAACAATATTGAAATCATAATGGTCACAACCATAAACTGTCAAGAAAAGGGCAATTAAATTTGTCTGACGTCAAGTCCATCAGAGTCCTGTAAGATCTGAGAATTGTTGTGTTTTTATTGGGGATTTTCAAATTAATCATTTTCTATATTTGTATTTTTGAAACAAATGTAGAGATTGTTCCGTCTTTCAAGAATCTCTGAATTTACAAATCCAGTGACAAATCATTTTTATTTGTTATCTATTCATGATCCTTATTTTGAGATTAAAGACTTCTGCGTTAGTTATTCATATGTAAAAAGTCTGAGGGTGGAAAAATACTTTTCCtttgcaaggggggggggggggatttgccGTTTGTTTGAACAGGAAATCTGCCATAGACGATAGTTTCACATTCTATCACTGAAGCTGTGATCTGTCCCAATTATGCATGAGAACATACTGTCTATTCTGGTTGTTTTGTTATTACACAAGAAAAAGCTGAGGTAATCATTCAAGTTCTGAGCTCAGGCCACAGTGGATACCGCATGCATCATTTATCCTGTCATTTGGTTTTACATAACAGCTATATGGAGAAAAGGGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2421157 lncRNA downstream 5299 21937480 ~ 21937682 (-) True G2117364
TU2421152 lncRNA downstream 9038 21933732 ~ 21933943 (-) True G2117359
TU2421150 lncRNA downstream 13144 21927559 ~ 21929837 (-) True G2117357
TU2421140 lncRNA downstream 20346 21919532 ~ 21922635 (-) True G2117349
TU2421123 lncRNA downstream 21713 21919532 ~ 21921268 (-) False G2117349
TU2421199 lncRNA upstream 76817 22025075 ~ 22025416 (-) True G2117406
TU2421168 lncRNA upstream 80313 22028571 ~ 22125191 (-) True tnr
TU2421222 lncRNA upstream 114522 22062780 ~ 22081034 (-) True G2117428
TU2421319 lncRNA upstream 225525 22173783 ~ 22173984 (-) True G2117523
TU2421332 lncRNA upstream 230946 22179204 ~ 22186417 (-) True G2117536
XM_021589498.2 mRNA downstream 66272 21873216 ~ 21876709 (-) False mrps14
XM_021589497.2 mRNA downstream 75946 21864614 ~ 21867035 (-) True LOC110508737
XM_021589495.2 mRNA downstream 80550 21852912 ~ 21862431 (-) True plk3
XM_021589494.2 mRNA downstream 157078 21707382 ~ 21785903 (-) True eif2b3
XM_036966444.1 mRNA downstream 161753 21707382 ~ 21781228 (-) False eif2b3
XM_021589505.2 mRNA upstream 18037 21966295 ~ 22125301 (-) False tnr
XM_021589506.2 mRNA upstream 18037 21966295 ~ 22125301 (-) False tnr
XM_021589507.2 mRNA upstream 18037 21966295 ~ 22125301 (-) False tnr
XM_021589508.2 mRNA upstream 254190 22202448 ~ 22212425 (-) False cop1
XM_021589509.2 mRNA upstream 254190 22202448 ~ 22212426 (-) True cop1
TU2421081 other downstream 66331 21873216 ~ 21876650 (-) True mrps14
TU2421079 other downstream 71928 21870685 ~ 21871053 (-) True G2117313
TU2419508 other downstream 1083451 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2820925 19116090 ~ 19122056 (-) True LOC110508678
TU2416913 other downstream 2934484 19007232 ~ 19008497 (-) False G2113520
TU2422040 other upstream 646275 22594533 ~ 22607806 (-) True G2118200
TU2423555 other upstream 1376743 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2716616 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2782416 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 3195804 25144062 ~ 25148520 (-) True G2121444

Expression Profile