RNA id: XM_021589507.2


Basic Information

Item Value
RNA id XM_021589507.2
length 6595
RNA type mRNA
GC content 0.49
exon number 22
gene id tnr
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21966295 ~ 22125301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagcgagtcagagagcgagaggcagagagcgagtcagagagcgagcgggggagagagagagcaaaagcgAGGAGCACACATTGCTTCCCCATTGCAGCtgtgagaggcagggagagaggagagctctCATCTGATCAGCAGTAGTAACAATACAGGGCTACATACATACTTGGCTGAAAGATCAATACAGTCTGCAAAAGATgctaggagagtgagagagaagccTCTTGGAGATCAGTGTACAGCGAGAGAAAGGGACCGGcaccagagggaagagagagataaaccGAGGGAAATCGGGTGCAAGATTAGACATCGAACACAGGAGAACCACCGCTTGAATTTAAGatcctatCGGAAGTCTGTCGGTAAGCACGGTGGTGTCAGGAGAGCCCTATCTCTAGGTACGAGGCTCTAACGCCGTGGTGGTTCACCATGAGCCCTGTACGAGGCTGGCTGCTGGGCCAGGTTCTACTCCTTCTGGGGACCCAGGCTGCTCTATCCCCGTCCGGTGAGGAGGGGAAGCTGGTCCGGACCATCAGGGTCAGACGACAGGCACCTTCAGATGGCCCCACCAGCCAATCTAACAACCAGACCATCAAGGAGCAGCCAATGGTCTTCAACCATGTGTACAACATCAACGTGCCCCTAGAGTCTCTGTGCTCAGTGGATCTGGACTCAGCAGTGCCTCTACCTAGCCAGGCCACCAGAGGGGCTGTGTCCAGTGGGGGTGGGGAGGGCGCCACGGAGTTCACAGAGCAGACAGTGGACGCAGACAGCCAGGTCACCTTCACCCACCGCATCAACATCCCCAAACAGGCCTGCGCCTGTCCTACAGCCAACATCGTGCAGCAGCTGGCCATCCGCATCGAGATgctggagagagaggtgttgctTCTGAGAGCCCAGTGCAGCTCTGGCAACTGTGGCTGTGGGGAGAGTTCAGTCACGGGTCACCTGGACTTTATTCCCCAGTGCAGTGGCCATGGCAGCTTCAAAATGgacctgtgtggctgtgtgtgtgaggacgGCTGGACGGGCAAGAACTGCTCTGAGCCGCGCTGCCCAGACAACTGCTCCGGACAGGGAGTGTGTAtggagggtgagtgtgtgtgtgaccgtgaCTTCGGGGGGGACAACTGCTCAGAGCCCCGCTGCCCGGCGGACTGCTCCGGTCGAGGGCTGTGCATGGATGGGGAGTGTATCTGTGAGGAGAACTTCACTGGAGAGGACTGTACACTGGGTCGCTGCCTCAATGACTGTTCTGACCAGGGGCTGTGCACCAACGGAACCTGCCAGTGTCGCCCGGGATACGTAGGAGAAGACTGCTCCTTGGCCTACTGCGCCAACAACTGTAGTCAGAAGGGCATTTGTAAAGAAGGCTTCTGTGTCTGCCAAGATGGCTTCGCTGGAGAAGACTGCTCTGCAGTGGCTCCGGCTCTGAACCTGCGCATGCGGGGAGTGACGGAGCATACCATTGACCTGGAGTGGGAGGGGTCAGTGTTGATGACGGACTACCTGGTCACCTACGTGGCCACCAGCCCAGGTGGGGTCCAGCTGGAGATCAGGATCCCTGGGAACACCACCACCTGCAGTATCCCAGACCTGGAGCCTGGCATCGAGTACAACATCAACGTCTACGCTGTGCTCAACAACGTCATCAGTGCCCCTACCAACACTCAGGTGTCAACCTATCTCTCAAATCCAGACGGTTTACTCTTCAAATCCATCACAGAGACGTCAGTGGAGGTGCAGTGGCAACCTTTCTACTACTCCTTTGATGGCTGGGAAATAAGCTTCATTCCCAAGGACAATGATGGAGGGATGACAGCCCAGCTACCCAGCACCATCACTTCGTTCCACCAGACAGGCCTGAGGCCAGGGGAGGAGTACACCGTCAACCTGGTAGCTCTAAGGGACCAAGGCCGCAGCCAGCCTGTATCCGCCACCGTCACCACATTGATTGATGGGCCGACACAGCTGATAGTGCGTGATGTCTCGGACTCGGTAGCCTTCGTGGAGTGGACCAATCCCAAGGCCAAGATGGACCAGATAGTGCTGCGTTATGGCCTGGTAGGAGGGGACAGTCCCAAGACTACTTTCCGCCTGCAGCCCACCCTCAGCCAGTACTCCCTGCAGATGCTGAGGCCAGGCTCGCGCTATGAGGTGTCCATCAGTGGTGTTCGCAAGGGCAATGAGAGTGGAACAATCTCCACAGAATTCAGCACCGTTCTGGTGTTCCTCTCAGAGATCGACGCACCCAAGAACTTGCGAGTGCTGTCCAAGTTCTCCACCACCCTGGAGCTGGAGTGGGACAACAGCGAGGCGGAGGTAGAGGGGTACCAGGTGGTCTACAGCACCCTAGCAGGGGACCAATACGAAAAAGTCATTGTCCCACTCAACGATGGACCCACCAGCAAGACCACACTCACAAacTTGTTGCCAGGTACAGAGTATGGCATTGGCATATCGGCTATGCTTGGCACCAACCAGAGTTTTCCTGCCACAATGAACGCCAGAACTGGTCTAGATGTCCCCATGGACCTAACTGTGACAGCGTCCACAGACAACACCATCACCCTGCTGTGGGGGGTGGTCCAGGGGCCTATCGACCACTACATGGTCACCTACACCTCCTCATCTGGCCTGACCACGGAGGTGACCATCCCCAAGGACGTGACCACCACCACGCTCAATGACCTGGAGCCAGGCACAGAATACACCATCACTGTAGCTGCCCAGAGGGGAAGGCAGCAAAGCACTGCAGCCACCATCGATGGCTTCACAGGAATGGATCCACCTAAAGAGATGACTGTGTCATATGCCACTGAAGACTCCGTCATCATATCATGGTTGAGACCGTTTGCTCCCTTCGACTACTACAAGATGTCCTATCAATCAGCAAGAGGGACAGTGGACAGCGTGGTAATTGACAATGACGTCACTAACTACACCCTGTCCAGCCTCCACCCAGCAACAGAGTATGAGATCAACCTGAACGTTGTGCGAGGCAGCCAGGAGAGCAAGTCCATCACCACCAGGGTCTTCACAGCGATGGACATGCCAATGGAACTAACAGCCCTCAACATTACCCCACAAGGAGCTTTACTCCGGTGGAACCCTCCTCTGTCCAGCGTTGACAACTACGTGTTCACCCTCACCTGCTACCAGGTGACAGCTAATACCTTCCTGGTGGAAGGTGTGAAACAGGAGCACCAGCTTAGTAAACTCAAGCCCAGCACCACTTACTCTGTAGCCCTCTATGCCACCAAGGGACCCTTGACCAGTGGAACCGTCATCGCCAACTTTGAAACACCCATGGACGCTCCTCTGAACCTGACGGCTAGCGAGGTGAACCACCGCAGTGCCCTCATCTCCTGGCAACCGCCCATCGCAGACATCGACAACTACATGCTCACATACAAGTCAGTGGACGGCAACAGAAAGGAGCTGATCCTGGATGCCGAGGACACTTGGATCCGTCTGGAGGGGCTGGCAGATACCACAGAATACACTGTGAGGTTGCAGGCTGCCAGGGGATTAGAGACCAGCGGAATCGTCTCTACTGCCTTCacaacaggaaACCGTCTGTTTGCCACCCCCCAGAACTGTGCCCAGCATCTGTTGAACGGGGAGTCCCTCAATGGCGTCTACACCATCTACATCAACAGAGACGCCAATCAGGGAGTGCAGGTCTACTGTGATATGACCACAGATGAAGGAGGCTGGATCGTGTTCCAACGTCGTCAGAACGGCCTGACAGACTTCTCCAGAAAGTGGAGTGACTACAGGGTCGGCTTTGGAAACCTAGAGGATGAATTCTGGCTCGgttTGGACAACATACAGAAGCTCTCAGCTCAAGGTCGCTATGAGCTCCGGATCGACATGAAGGATGGCCAGGAGTCTGTCTACGCCAGCTATGACAAGTTCGCCATTGGAGACGTCAGGAATCTGTACAAACTCAGGATAGGAGAGTACAATGGCACAGCTGGGGACTCGCTGAGCTATCACCAAGGCCGTCCCTTCTCCACCAAGGACAGAGACAATGACATCGCCGTGACCAACTGTGCTCTGTCCTACAAAGGAGCCTGGTGGTACAAAAATTGCCATCGGGCCAACCTGAACGGGAAATACGGCGAGTCGAGACACAGTCAGGGTATCAACTGGTACCACTGGAAGGGCCATGAGTTCTCTGTCCCCTTTGTGGAGATGAAAATGAGGCCGTTCAACTACCGCAGCATCAGTGGCAAGCGAAGGAGGTCCACTCCTCCAGAATAAACCCCTACACCTTACCCCTCAACCCCAATCCAGCTTGCTGTTCCTACTTTTACATAAGGCTGAAAGACAAAAGGAGGAGCTATGCAATTTATACAAAATTTGAATGACAATGGTTCTGTTAGCTAGCCTAGATATCCAGACTGAACTCAGCTCTGTTTCATGTTTGTTTCACAATCCATTCAGTCTGGATTTTAAGGCTATCTATTTGCTAAAATGGGGAGGTAAACCATAAGGTTTTTATGTTTAGTTATTTGCCCTGTCCTGGAAGGTGAAGAGATGAACTCAGAGTAGCTGTCATGATCTTCTCTCTATCTATACAATATAAGTACATGAGAGCTGGGATTATTTTCCCCATTAAAAAAAAGTAATTTTAACAAAATTCTATATGCCCGTAATCAAGTAAGATATCTCTATTTTTATAACTGATATTGTAACAAAGTTAATTTATTACATGATATAATTTGATGCCTTGTTATTGATATTTTTATTGAAATAGCAACCCTCCATGAGTTTCATAGTCAAATGCCTGCATGGAGAAATTCATTGGACATTGACAAAACATTGGCACTCATAATGAGCCAATCAGCATTAGCAATCACCAAGCTACACACCAGCCTGTAGCAGTGGATTCAACATCAgctattgatttatttatttatgtccaTTGGTCCAATTTGCTTTTGAATATACAATAAAATCCCAAATCCACACCCTTGTTGGAATGGAAGAAACAGGATCATCAAACAATAGCTGTTCAACTTGAAATGTATAGGCCTAGACTCCAGTGCCCATTTAGTAAGAAAATAACAGTGAGCAAGTTATTTGCGCTGTGGTAATACATAGTATGACCATTGTCATTCAATACTTGTCTTTACACTGCCCTGCATAACTCAAATATATAACATTGTTGACCAATATTCACACACGGTATTCTCCATGAGGAGATTCCAACTCCACAAACAAATATAAAGCTGTGTGAAGATCCTGTTTAGGAATTAGCACTCTCAAATGTTTCCCCGCTATGTTACTTGCATTGATGGTGCTAATAGTTCTGACATGAAACCAAAGATTTGCTGGAGAGAAAATGCGCTGTCGACAGAGATCTCTTTCTTCGTAGCCTCATCATCACCttagcagatgtttttgtgaTCCTCGGTTTTAGGCCCAGCAACAAGTCTCATGGTTACTTTGTGAACATTAGTTCTTTGTCAGTATTTTAGCGAATGATTTGAAATTGATAAGCTCATTTACTGTATGTTGGTGTTCGATAGTCGTCCTGTACGTTATACAATCCTCTGTCTCACCCATATTTAATGTTTAACTATGTTATGCCACCAGTGCAAGTAACACTTGGCCTGCTGTAGAGAACCCCTCATGTCCTCGATGTACATTTGATGGATACACTGTAATCCTACTTATCCAATACTTTTCATCAAATCGTTTAACTGTATTGTTCTCCTTAGTTGTTTTTATTGACTAATTGACTCATATTTTCATTCAGATATGGCTTAAATACCCTCACCCAATCTCTACAAACTGTAACAACCGCACAGTGGGTCATAATCATTTTGTACATTTTATGTCGTTCATTGTCCTTTAGACTTGATGACTTGAAACAATGGTGATTATCCATCCTATAGACTACTGGTACTAATATATCCATATAAGAATTAGGAGGAGGAGACATATTTCAGTATTTACCCTTGTAGATGCAGAGTAATATAGAAGCATTAAGAAACGCTGATACTACTTCCCCTATTGTTCTAACCATAGTTGTTAACACAGACTTGTTTTGAAAAGGGGTGAGCCTACTGCATGCTAACAATCATGATCAACACCTCCATGGTAACAACAAACGTGTCATCAGaatctgcatcgttgggaagggctcttaagcaagcatttcacggtaaattCCACACCctttgtattcagcgcatgtgacaaataaaatgtgatttgattttgatttacttTTGAATTTAAATGTAGAAATTCTCCTCTGAATTCTGCTTGTCAAGTGACTGTTTCAGATCTGTTAATGCAATGCATCTCCCAGAGCAAGACATTGTGTTTTCTTTTTTACTAGAATAGGATGTGTACTTATTTATTAACTACTTAGACTAACTTTGCTTCATGGCACTTTGTGCAAGGAATGAGAGTGATGAAGCTCTGTAGATAACAGATGGAATGTATTTAACATAAGAGATATCACTTTTGTCAAACGCTGGTGTGCCCGAATTGTAATCCAAATGCTTACTGACTCCTGCTCTCTTTCACAGAAATCTGAAATTAATGaattgtcaatcaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2421157 lncRNA downstream 28613 21937480 ~ 21937682 (-) True G2117364
TU2421152 lncRNA downstream 32352 21933732 ~ 21933943 (-) True G2117359
TU2421150 lncRNA downstream 36458 21927559 ~ 21929837 (-) True G2117357
TU2421140 lncRNA downstream 43660 21919532 ~ 21922635 (-) True G2117349
TU2421123 lncRNA downstream 45027 21919532 ~ 21921268 (-) False G2117349
TU2421319 lncRNA upstream 48482 22173783 ~ 22173984 (-) True G2117523
TU2421332 lncRNA upstream 53903 22179204 ~ 22186417 (-) True G2117536
TU2421347 lncRNA upstream 71668 22196969 ~ 22197181 (-) True G2117551
TU2421349 lncRNA upstream 72470 22197771 ~ 22198098 (-) True G2117553
TU2421353 lncRNA upstream 75221 22200522 ~ 22200930 (-) True G2117557
XM_021589503.2 mRNA downstream 17738 21944809 ~ 21948557 (-) False LOC110508740
XM_021589504.2 mRNA downstream 17738 21944809 ~ 21948557 (-) False LOC110508740
XM_021589502.2 mRNA downstream 17987 21944809 ~ 21948308 (-) False LOC110508740
XM_021589498.2 mRNA downstream 89586 21873216 ~ 21876709 (-) False mrps14
XM_021589497.2 mRNA downstream 99260 21864614 ~ 21867035 (-) True LOC110508737
XM_021589508.2 mRNA upstream 77147 22202448 ~ 22212425 (-) False cop1
XM_021589509.2 mRNA upstream 77147 22202448 ~ 22212426 (-) True cop1
XM_036965985.1 mRNA upstream 161365 22286666 ~ 22527070 (-) False astn1
XM_036965978.1 mRNA upstream 161365 22286666 ~ 22527071 (-) False astn1
XM_036965981.1 mRNA upstream 161365 22286666 ~ 22527071 (-) False astn1
TU2421094 other downstream 18037 21942981 ~ 21948258 (-) False LOC110508740
TU2422040 other upstream 469232 22594533 ~ 22607806 (-) True G2118200
TU2423555 other upstream 1199700 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2539573 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2605373 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 3018761 25144062 ~ 25148520 (-) True G2121444

Expression Profile