RNA id: XM_021589509.2


Basic Information

Item Value
RNA id XM_021589509.2
length 3456
RNA type mRNA
GC content 0.43
exon number 20
gene id cop1
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22202448 ~ 22212426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGTTCACCTTCGCAGCTTTAACGCACTACTCCTGCGTAGTAGGGGGCAGTAATGAATCTTTGCCAGGAATGTGGGTTCGTTTTGTGTCAGACATCTGAGTAACCGAGGAGATCCAGGAGATGGTTTCTAATTCCCTGAACGTAGACAGACAGCGGTGAAGATTGTATAATTCTTGTAACTTTGTTATGGTCGACTTGTTGACAAAAGCTTACAATTGAATCTAAAGAAGTTAGCTAACAGCGAGCCTGTGTGTATTCGTGCATTGTTATTTTATCTTAGCTCACTAGCACATTAGCTGgtaagctaacattagctagctagcaagctaactaactaaatagctgAGCCCGGATGCGGTGAACTACAACAAGACAAGTCTTTGGCCTTGGAAGAGTTGGGCATCAGGCTTGAATTATGTCAAGCAACCGTCAACAGCAAACTGGCGGTGGAACGGGGCCTGGGACAAGTAGCAGCAGTACCGGTGGCACTACCAATGCTAACGGTGCTACCAGCGTAGGCGGTAACGTCAGTACGAATGTGAACAATTCTTCAAATGTTGTGCCCTCACGGACTCTGGCTACAACTGGCGATGGGTTGCTCGTACCTGCAGCGGCTGTCCAGTCTCCAATAAGCTTAGCCACACTTAGCAGACCCAGTTCATCCTCTTCTGGCACCAGCAGAAAACGTCCTCTCCACCAAGCACCTCTCTACAATGGTCTCTTGAATTCCTACGAAGATAAAAGCAACGATTTTGTGTGCCCGATCTGTTTTGAAATGATTGAGGAGGCACACATGACAAAATGTGGACACAGTTTCTGCTACAAGTGCATTCGCCAGAGTTTGGAGGACAGCAATAGGTGCCCAAAATGTAACTACATCATTGACAACGTGGATCAGCTCTATCCAAACTTTCTTGTCAATGAACTCATTCTCAAACAAAAACAGAGATCAGATGAAAAACGTCTGAAGATGGACCATCCGAATGGGTCAAGATGGCAAGTGTTTCAAGACGTCCTGGGCACAGACCAAGAAAACCTAGATCTTGCTAATGTCAACTTGATGCTGGAACTCCTTGTACAGAAAAAGAAACAGCTGGAAGCGGAATCACAAGCTGCTCAACGTCAGATCTTAATGGAATTCCTCAAAGAAGCAAGAAGAAATAAAAGAGAGCAACTGGAGCAGTTGCAGAAGGAGCTAAACTTTTTGGAGGAGGATATCAAGCGTGTTGAGGAAATGAGTGGACTGTACTCACCAATGAGTGACATGGATCGTAACTTGGACAGCACTGTGCCCAATTTCGAGGCTCCCTCACCTGCACCtagTAGTCTTATGGATTCGACAGAGTATCCGAGTCAACCACCAGGTTTTGGTGGAACTTCCCAGGGTAAGAGGCAAACGTGGTACAACAGTACTCTGGCTTCACGTAGAAAGAGGCTCACAGCGCACTTTGAAGATCTGGAGCAATGCTACTTCTCTAACCGGATGACCCGATTAACAGATGACAGCAGGAACCTAAATCAACTGGATGATTTCATGGAGTGTCTCTCAAAGTTCACACGGTACAACTCTGTGCGGCCGTTGGCGACCCTGTCTTATGCTAGTGATCTCTACAACGGCTCCAGTATTGTCTCTAGCATTGAATTTGATCGTGACTGTGATTACTTTGCCATCGCTGGCGTCACCAAGAAAATCAAGGTGTTTGAGTATGGAACAGTGATCCAGGATGCTGTGGACATTCATTACCCTGTCAATGAAATGACGTGCAACTCCAAAATCAGCTGTATCAGCTGGAGCAGCTACCACAAGAATCTGTTGGCTAGCAGCGACTACGAGGGAACAGTCATCCTGTGGGATGGTTTCACTGGCCAAAGGTCAAAGGTCTATCAGCATGAGAAAAGATGTTGGAGTGTCGATTTCAACCTCATGGATCCCAAGCTTCTAGCCTCTGGTTCTGATGATGCGAAAGTGAAGTTATGGTCTACCAACCTTGACAATTCAGTCGCCAGCATCGAGGCCAAAGCAAATGTGTGCTGTGTAAAGTTCAGTCCGACATCGAGGTATCACCTTGCTTTTGGATGTGCGGACCACTGTGTCCACTACTACGACCTCCGCAACACTAAACAGCCCATCATGGTGTTCAAAGGCCACAGGAAAGCTGTGTCCTATGCTAAGTTTGTCAACGGAGAGGAAATTGTATCTGCCTCAACAGACAGCCAGCTAAAGCTGTGGAATGTAAACAAGCCCCACTGCTTGCGCTCATTCAAGGGCCACATCAATGAGAAGAACTTTGTTGGCCTTGCCTCCAATGGGGACTATGTTGCGTGTGGAAGTGAGAACAACTCACTTTATCTCTACTACAAGGGGCTGTCCAAGACACTGCTGACATTCAAGTTTGACACTGTGAAGAGTGTGTTGGATAAAGACAAGAAAGAGGATGACACCAACGAGTTTGTCAGTGCCGTATGCTGGAGAGCTATGCCTGACGGGGAGTCCAATGTGCTGATTGCTGCAAACAGTCAAGGAACAATCAAGGTACTTGAGCTTGTTTAAGGTCCATCAGATCTCATCAAAGCCTCTGGAAATTACGGCTCCATTTCTTTCATGGCCAGTGGAGATTGGAGCGTATAGTTTCTTGGTCGAATAGAAACTTTGCAATTCTAGATCTGAGGAGCTGACCAGATTGGGAGAATGAATAAAACCAAAGTCCTTTGATTTTAATGAGCAAGAATACTTTGGAAAAGACTTTGTGTACATCATACACTAGGATTGTGGATGTATGTAATTCAGAATGAGATTGAGGGCTTTTCTGCACAAAAGTAGAAGATTACTCTTTTGAAAGCCTATTTGAATAAAGTTAATGACAAATAGAACATCTCTTAACATGATTTGAAATTGAATGGAAATGTTCTTTTTAATAAACTTGTTAAGTGTATTTCATAAGAGGTACATCCCGCAAGAAGGCCAAAgcacaagacaaaacaaaaataaaatgcaaAATGACTCATTGTATGAATGCATTTTCAACCCAATGTATACATCTGTCATCCTTTTCAATAGTCTTTGGTTTACCCCTATGTTTAGACTGTTTGTTTCAAGCAATGGCAACATCTTTTAACTGGACTTGTTTCCATTCTGCAATCAAGCTTTCAGTGGCATGGCTTAGAGTCAAGAATTTTGAGTTTAAAAATGCAACGGAAGATTGACTAATGACTCAAACATTTCACTCATGTTAcagtatatttttattttgtcaGTGAACATGTATTTGATAATACAAATCCTGTCTCCAAAATACTTTCATTTTGTATTAAATCATGATACATGTTGCAACCAGAACACGTCCAACACATGAGATCAAGTGGATTTGCTAGAATGCCAAGATGTACCTATTTTCTGAGAAACAACCAAGAGATGTTCTGTATTTGTATACCTAAATAAATTATTTGCAGAGAA

Function

GO: NA

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2421353 lncRNA downstream 1518 22200522 ~ 22200930 (-) True G2117557
TU2421349 lncRNA downstream 4350 22197771 ~ 22198098 (-) True G2117553
TU2421347 lncRNA downstream 5267 22196969 ~ 22197181 (-) True G2117551
TU2421332 lncRNA downstream 16031 22179204 ~ 22186417 (-) True G2117536
TU2421319 lncRNA downstream 28464 22173783 ~ 22173984 (-) True G2117523
TU2421368 lncRNA upstream 1833 22214259 ~ 22214654 (-) True G2117567
TU2421599 lncRNA upstream 9204 22221630 ~ 22221854 (-) True G2117790
TU2421601 lncRNA upstream 10409 22222835 ~ 22223035 (-) True G2117792
TU2421602 lncRNA upstream 11134 22223560 ~ 22223853 (-) True G2117793
TU2421606 lncRNA upstream 15233 22227659 ~ 22228018 (-) True G2117797
XM_021589505.2 mRNA downstream 77147 21966295 ~ 22125301 (-) False tnr
XM_021589506.2 mRNA downstream 77147 21966295 ~ 22125301 (-) False tnr
XM_021589507.2 mRNA downstream 77147 21966295 ~ 22125301 (-) False tnr
XM_021589503.2 mRNA downstream 253891 21944809 ~ 21948557 (-) False LOC110508740
XM_036965985.1 mRNA upstream 74240 22286666 ~ 22527070 (-) False astn1
XM_036965978.1 mRNA upstream 74240 22286666 ~ 22527071 (-) False astn1
XM_036965981.1 mRNA upstream 74240 22286666 ~ 22527071 (-) False astn1
XM_036965980.1 mRNA upstream 74240 22286666 ~ 22527072 (-) False astn1
XM_036965982.1 mRNA upstream 74240 22286666 ~ 22527072 (-) False astn1
TU2421094 other downstream 254190 21942981 ~ 21948258 (-) False LOC110508740
TU2422040 other upstream 382107 22594533 ~ 22607806 (-) True G2118200
TU2423555 other upstream 1112575 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2452448 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2518248 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2931636 25144062 ~ 25148520 (-) True G2121444

Expression Profile