RNA id: XM_036965979.1


Basic Information

Item Value
RNA id XM_036965979.1
length 5632
RNA type mRNA
GC content 0.49
exon number 23
gene id astn1
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22286666 ~ 22527081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAGCAACATCTTCAATGGCTTGATTTGGGTATTTCCAATAAAGGGGTCAGTGGTACTGCGCATTTTTGCCTTCCCCGCTATCATATAACTCATACGCTGCATTGAAATGATCAAAAATCATCTTTAACCATGTGACAGAGGGATTTGGGGATTTATGCGAAATAAACGCAATTTATTTTCAGAACAAAACAACCCGGAAATGTGTGCTTTGCCAGCGCATTCCCCCTCGCTCCTCTTCCTCTCGGTATTGAAGTGAAGCCCTCGAACAGAAAGGAGACGGGGATACGAAGTAGCGGTGATGCGGGGCATGATGGGTCTGAGATTGCTTGTCTCACTCGCATGGATTCTTGCCTTCAAAGCTGCTAATATTCAAGGTGTGAATGCCGACGAGGATCAGTCCCAAGATATGGAATGCAAAATGAAAAGCGTCACCGTGTCTGCGTTGCCGTTTTTGAGAGAAAACGACCTGAGCATCATGCATAGTCCGTCGGCCTCCGAGCCCAAGCTTCTGTTCTCCGTCAGAAATGATTTCCCGGGAGAAATAGTCGTCGTGGACGATCTAGAAAACACTGAACTCCCCTTTTTCGTCCTAGAGATCACGGGAAACTCTGAGGATATTCCTCTGGTGCGATGGCGGCAACAGTGGCTGGAGAACGGCACGTTGCTCTTTCATATCCACCATCAAGATGGCAGCCAGAACCTCCCCGGCCTCTCCGCCACGGACGACCCTTCCAGCGACTCTGCCGAGGAGGAGCTACGCATCCTCCACGTCTCTGTCATGGGAGGCATGATCGCTTTGCTCCTCTCCATCCTCTGCCTGGTCCTCATCCTCTACACGCGCAGGCGGTGGTGCAAACGCCGCCGTGTGCCCCAGCCCCAGAAGAGCGCCAGTGCAGAGGCAGCCAATGAGATCCACTACATCCCTTCGGTATTGATGGGGGGCCAGGCCAGGGAGAGCCTGAGAAACTCCAGGGGCCAGGGCCACAATTCCAGCGGCACGCTCAGTATCCGAGAGACTCCCATCCTGGATGGCTACGAGTATGACATCACTGACCTGAGACACCACCTGCAGAGAGAGTGCATGAACGGAGGAGAGGACTTTGCCAGCCAGGTCACACGCACCCTGGACTCCCTTCAGGGCTGCAATGACAAGGCCAGCATGGACCTGACACCTGGTGAGTGGAGTGACAATACAAAGTTGTCCCTAATGAGCAAGTACAAGGACAACATCATCGCCACCAGCCCCATCGGCAGCAATCACCTGCAGCAGAACACTCTCCTCCTCcacaacacctcctccactggCCAACGAAAACAACGTCTGTCCAGCAAAACTCGTGTGGGTTCAACCTTCTTGAACCCAGACGGGGACTCTGGCACGGAGGCCGACAGCGAACCTCAGCTGACCTTTTACACTGACCCCAATCGCAGCAGGCGCCGCAGCCGAGGTATGAGAAATGGTAACGCCAACAGCGCGTGGGGCTCAGGGGCAGGTTCCCCACGAAGCCCCATCAATAAGACCACCCTGACTTTGATCAGCGTTGTCAGCTGTGTGATCGGCCTGGTGTACTCCTCACACCTCTCCTGTGGCCTCAACGTCAGGGTCATACTCCATGTGCCCGAGCACCTCATCGCAGACGGGTCCAGGTTCATTTTGCTGCAGGGCAGTCAACTGGATGCATCTGACTGGCTTAACCCGGCCCAGGTGTTACTATACTACCAGCAGAATGCCAGCGGGCCTTGGATCAATGAGCTGTGTGGCCGCCGCATTCTGGACCCCTGTGAACACCAGTGTGATCCAGAGACAGGTGACTGTCTCTGCTTAGATGGTTACATGAAGGACCCAGTCCACAAGCATCTCTGTATTCGTAACGAGTGGGGTCCAAATCAAGGACCCTGGCCTTACACTATTTTCCAGCGTGGTTTTGATCTGGTGATGGGAGAACAACCATCTGATCGCATTTTCAGGTTCACATACACATTGGGGGAAGGGATGTGGTTACCATTAAGTAAAAGCTTTGTCATTCCACCTGCTGAGCTGGCAATCAACCCTTCAGCCAAGTGCAAGACTGATATGACTGTCATGGAGGATGCTGTGGATGTGAGAGAAGAGCTGATGATCTCCTCATCGTTTGACAGTCTGGAGGTTTTACTGGACTCGTTTGGCCCGGTGCGCGACTGCTCAAAGGACAACGGTGGTTGTAGCCGAAACTTCCGCTGCGTCTCTGACCGCAAGCTTGATTCCAGTGGATGCATGTGCCCTCCTGGACTGAGTCCCATGAAGGATGGCACAGGCTGCTATGACCACCACATTGGCATCGACTGCTCTGACGGCTTTAACGGAGGCTGTGAACAACTGTGCCTCCAGCAACTCGCCCCCCTGGAGGATGACCCCACTCTTTACAACATCCAGATGTTCTGCGGTTGTATTGAGGATTACAAGAAAGGTCAAGATGGTCGTTCCTGCCAGCCCCTGTCTGAAGCCTGTACCGAGGGACTGGACTGTGGGGAGACAGCTGACATCCCAGCCAACCAAACCGTTTTTGGGGATCTCTTCTATGGCTACAACAACCACACCAAGGAGATCACCTCTGGGCAGATCCTCAAAGCTACCTTCAGGCAGAAGAACTTTGCCCGAGGCATCGAGCAGCAGCTCCCAGATGGCATGGTTGTGGCATCAGTTCCAACCGAGGTGCAATGCCACGAAGAGCTGTCAGACCCAGTCCCTGACCCAGACTATCTCACAGGAATGGTGAACTACAGTGAGGTCTCTGGGTACCCACTCATCCAGCAATGGCGGCTGAGGTCCATCCTGTACCACGTCAAACTGAACCAGTGGGTACTCTCTCAAGCGTTCAGCTCTGCGATCCACTCCCTGGACGGTGCCACCCTCCGCAGTGATTTTGTCTCCATCCTCAGGGAGTTTGGTAATCACTTTGTACAAGAGGCAGTGTACGGCTTCGAGGAGGCCTGCACTATCTGGTACCCCAACAAGCAGGTCCAGAGGCAGCTGTGGCTGGAGTACCAGGACATCAGCAAAGAAGAGTCAGAGGAGCGCGACAAGGAGCCCCGGACCCTGACCTACCCAGCGTACATCGCCAGCCTGCTGGACTCCGGTGCCAAGCGCATGGCGGTGGGGGTGCGCATGGACTGCAGCAGCCAAGGCCAGTGCCCGTACTCCTGCCACCTCTGCCATATGAGCCCTGGGCCTGGGCGTCCAGCTGAGCCTGTACTGCTCCAGATGACTAAGGCCACCCCGCTCTACGAGCTGGTCTCCAACAACGAGACCTACCAGGCACTGCAGGAGGCCATGATGAGCATGCTCTGGTGTTCTGGGAAAGGTGACGTCATCGATGACTGGTGCCGTTGCGACTCGAACGCATTCGGGATGGACGGCCTGCCAACATGTGCACCTCTCCCCCAGCCTAGGCTTAGGTTGTCCCACTCCTATGAGCCTAGCAGTTCATTGGTCATCATGGAATGGAATCACACTGAGCCACTAATTGGGGTGCGGATTGTTGATTACCTCATCAGCCAGGAGAAggtgacagagaggacagaccacTCCAAAGTGGAGACAGAGACGATGTTGAGCTTTGTGGATGACATCCTGTCTGGGGCCAAGTCTCCGTGTGTGATGCTTGGGGATATCCCTGACCTCTTGACCTCCTCCGTGAGCATGATCATCCGCTGCCTGGAGCCAGACACAACATACATGTTTAGGCTCTGGGCAGTGGACAACACAGGCCGTCGCTCCAGTCCTAGTGAGGTCACCATCAAGACCCCCTGTCCTGCTGTGGATGACGTCAAAGCACAAGAGATTTCAGACAAGATCTACAACTTGTTCAATGGTTACACAAGTGGCAAGGAGCAGCAGACGGCCTACAATGCGCTGATGGAACTGGGCTCTCCCACCCTGCACCGTGTGCTCTACCACTACAACCAGCGTTACGAGAGCTTCGGAGAGTTCACCTGGAGATGCGAGGATGAACTGGGGCCCAGGAAAGCTGGCCTGATTCTCTCCCAGCTGGACGACCTGAGTGGCTGGTGCAGGGGTCTTCTCCAGGAGTCCAAGATCGGCCTGCGCAGGATGTCCCTCAAGTACCTGTCCTGCCGTTACACAGACACCAAAGCCTTTGGTCTCAACTGGGTGGAACTGGGCCAGGATGTGCGAAAGGCCTGCGACGAACAGAACCTGCTAGTCATGTACAATGATTATGGGGAGCCCAAAGAGCGTTGAACGTCACACAGCAAATAATGGGTCTTGAGGATTTGTAAGTGTGTAATTGTGCTTTTGGGATTATCATCATGTCTGCTTTTTAATTATTGTGTGTTCTAACCCTTATTTATTGTTATAGGAACCTGATTTCAAGGTAGGGTGGGTTTGAGAGGTGAGGAGGGTTTATTTAAAATATTATTAGAGCAAAATATAACAATAATGCACATGTACAGTAACAAAGTGTACATGTACCTTTCTCAATGCTTAATTGCATTTAGACAGACTTTTTGGACGTTTGGAAGTTTGGAAGTTGCACCAACAATCCTGAAccctaaaaatgtatatattaggATTATGAAGATTGAGATAATTTACTGTAACATGTTGAATGTAGTATTCAAGTATAAATTCATATTTAAGCTGTTGTACAGAGGTCTTTTGTATTTAGACAGTCCGTATATACAGTAGTGGTCATTTCAGAAGGTTGGGAGGTCATGTACAGTGTGGCTCTAAATGTTAAAAGTTAAAGTTGCCAAACCCAAATGACAGTATTTGCTACATCAATGAATTCCTAatcattctgaaatcaacaaatgGCTATCTTTCAATGTTTTATATTGTTTATCCGTAGTATGTTTAGAAATGAACATTTGTATGTGTCTTAGGAATATACATGATGTGATCCTGTAAAAACACTAATACCTTTGATACCTGTGTTTTACTACAATACGCAATTAATATAAACCAAATGCCAActgttttctttaaaaaaataacaattacgCTCCTCACAAACGTTGATAATGGAATAGTTATCCCCATAACATGGACTTGAAAACAAATGCTTGTAGATATTTTCATAGGTTCACCAATGCATCAAATGACAGCACAGTGGTTAGCCTCTGTAAATATTGTATTACAAATGATTTCTATTATAACATTAATAACAATGGGCCTCAGCTGTAAGGATATGTCTTTTATTATGAGAAAACCATTGGTTGACATTGATAGGTATGCTTTTTTTTGTTTCAATTTGCACATGAGAGGTGTGAGCATTCATTATGTATACATGTTTTGTGTATGCTTGCATTATGTTTGTTCTGAGACTGTTTCCCAAAATAATGGAGAGGTTTGTTTTATCAATACAATGAAGTGGATTACACAAATGGACAGATTATAAGGCTTAACAAATGTTATTATCGATCAGAAGTGCATCAGAATTGTTACCATACACATCATAAAGCTGATGGAAACTAAAGCTGATGAAAACTAACAAAAAGCAGCATGTTATACTATTATGTCTATGTGGCTAATCTAATGTTCTCTTTTTCCCTTGGATCTTTGCTATTTCAaagaataataaataatatattatGAAATGTTGGAACGTTGGACGTTCCAAAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2421673 lncRNA downstream 5786 22278397 ~ 22280880 (-) True G2117840
TU2421660 lncRNA downstream 25142 22261302 ~ 22261524 (-) True G2117830
TU2421653 lncRNA downstream 36261 22250192 ~ 22250405 (-) True G2117823
TU2421651 lncRNA downstream 38048 22248348 ~ 22248618 (-) True G2117821
TU2421616 lncRNA downstream 46917 22239532 ~ 22239749 (-) True G2117807
TU2421868 lncRNA upstream 17588 22544661 ~ 22544893 (-) True G2118030
TU2422033 lncRNA upstream 58675 22585748 ~ 22601652 (-) True G2118194
TU2422097 lncRNA upstream 147591 22674664 ~ 22674929 (-) True G2118250
TU2422098 lncRNA upstream 150124 22677197 ~ 22677415 (-) True G2118251
TU2422208 lncRNA upstream 265346 22792419 ~ 22792756 (-) True G2118359
XM_021589509.2 mRNA downstream 74240 22202448 ~ 22212426 (-) True cop1
XM_021589508.2 mRNA downstream 74241 22202448 ~ 22212425 (-) False cop1
XM_021589505.2 mRNA downstream 161365 21966295 ~ 22125301 (-) False tnr
XM_021589527.2 mRNA upstream 268566 22795639 ~ 22816740 (-) False dars2
XM_036967134.1 mRNA upstream 268566 22795639 ~ 22816743 (-) True dars2
XM_021589528.2 mRNA upstream 294999 22822072 ~ 22828641 (-) True LOC110508750
XM_021589533.2 mRNA upstream 407187 22934260 ~ 22939565 (-) True LOC110508754
XM_021589537.2 mRNA upstream 515465 23042538 ~ 23055346 (-) True nmnat2
TU2421094 other downstream 338408 21942981 ~ 21948258 (-) False LOC110508740
TU2422040 other upstream 67460 22594533 ~ 22607806 (-) True G2118200
TU2423555 other upstream 797928 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2137801 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2203601 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2616989 25144062 ~ 25148520 (-) True G2121444

Expression Profile