RNA id: XM_021589527.2


Basic Information

Item Value
RNA id XM_021589527.2
length 2893
RNA type mRNA
GC content 0.47
exon number 17
gene id dars2
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22795639 ~ 22816743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCACTAATCTGTAAAAATAACGGATGGACACACTATAAACAACTAACTGTCGATAACAAGCACATCCATATTTATTCAGACTTGTGCTTTCTACTTCCGCCTGAACGTGGACGAGACAAGGAAGGAATTAGAGGACGCTTGTACCACAATCACATTGAAGGAACCAGGGAGATTTAGCTACCTAGCGCCGTTGTTTGGACAAAATTGACATGATGCAgctacattttttacatcaagtTTGCCAGTCGCTTTGATCGGGCGTAAATCGTATGAGTTTTatgtagctatctagctagcagtCATATGCAACAAGCAGCCAGTGTACAAGACATATCTTTACAATATTAGATAATAGCTGTTTAGTTAGCTACAGTACTGTTAGCTAGCAAGTTATCTGAAATGGCCAATAAAAGCAGAGCATTGGCGCAGAGGATGCTTCTCATCTGTAGACAGGAGACCAGGGCATATTCACTATGGCGAAGGACAACAATTCCGATTGCACATCTGATCAAACCCAGCATTATGCATTTGAAGTTTTCTCTCAATGTCAACAGACACTCAACGTGCACAACAGGTCCTAGCAGCTTGTCCTTTCGGAGTCACACTTGTGGGGAGCTACGGCCTGCTGATGTTGGAGAGGAAGTCACTCTGTGTGGCTGGGTTCAATACCTGAGACAGGATTTATTTGTTATCATGAGAGATTTCAGTGGCTTGGCACAAATTCTTATCCCTCAAGACGAGGACAAAATGAATCTGAAAACAGCCTTGTGTGACTTACCACCTGAATCAGTGATCAGGGTGAAAGGCACGGTCAGGCTTCGACCAGATGGACAAGAGAACAAGGAGATGCCCACCGGAGAGATCGAGGTTCTTGCAGAGAGTGTGGAGATTCTAAATGTCTGCCGTAAGCTTCCCTTTGAAATCAAAGATTTTGTGAAAAAATCTGAATCCCTTCGGATGCAGTATCGCTATCTGGACCTTCGTTCGTCACAAATGCAGTATAACCTGAGGCTGAGGTCCCAGCTAGTGATGAAGATGAGAGAGTACCTGTGCAATGTGCATGGGTTTGTGGATGTTGAAACTCCCACCTTATTTAAGAGGACTCCAGGGGGTGCAAAGGAGTTTGTGGTGCCCTCAAGAGAACCTGGTCGATTTTACTCCCTGCCTCAGAGTCCTCAGCAGTTTAAACAGCTTCTCATGGTGGCTGGCATTGACAGGTACTTTCAACTTGCCCGGTGCTACAGAGATGAGGGTTCCAAACCAGACAGACAACCAGAATTTACTCAGGTGGACATTGAGATGTCCTTTGTGGATCAAGCTGGAATCCGAGGTCTGATTGAGGGCTTGGTCCAGTACTCCTGGCCTGTGGAGAAAGATCCTGTCTCCACACCATTCCCCTGCATAACGTATGAAAAAGCAATGAAGGACTATGGAGTGGACAAGCCAGACACACGATTCGCCATGAAGCTCATGGACATCAGTGAAACATTCCACAACACAGAAATAGAGTTCCTTAAAGACGCCCTCAACCAACCAGGAGGATGTATCCAGGCAATCTGTATCCCAGATGGAGCAAAACATTTGAAGGGCAAAGATCACGAATCCCTGAAGCAAACTGCCAGGACCCAGTTCGGCCAGGAAGTGAGTGTAGTTTTGGTGAAGGCAGATGGTGCATTGAAGTCTCCCCTCAACAGACTCATGCCTGCCTCAGCTAAACAGCAGCTGCTCCAGATGGCCCAGGCCAGACCTGGGGACCTGCTGCTCATCTCTGCTGGGACGCAGGAATGTGTGCGCCCTTTGTTGGGCAAATTGAGGCTTCAATGTGCTGAACTCCTAGAGGACTCCGGTGTGGCTGTTCGAGACCCCTCAGCGTTTCACTTTCTGTGGGTGGTAGACTTCCCACTGTTCCTGCCAAAAGAAGAGGACCCTGATCAGCTTGAGTCAGCCCACCATCCTTTCACTGCACCTCTCCCTGAGGATGCTCATCTCCTGTATTCACTGCCTCACAAGGTACGTGGCCAGCATTACGACCTGGTCCTGAATGGGTGTGAGATTGGAGGAGGATCCATTCGTATTCACAAGGCCTCTGATCAACAGCATGTGCTGGAGACGATCCTCAAGGAGgatccatctctcctttctcacCTGTTAGAGGCACTGGACTCTGGGGCTCCCCCTCATGGTGGTATTGCATTGGGTTTGGACCGATTTCTGTCTATTATTGTCGGAGCCCCCAGCATCAGGGACGTGATTGCCTTCCCCAAATCATTCAGGGGCCATGACCTGATGAGTCATGCTCCAGACTTCGTCTCTGAAGACGAGCTTAAATCCTACCACATCGCTGTCAACTGGCCAGCAGGAGACGAAGGGAACCAGGAGAAATAGACATGGCTGCTGCTACACCTTTGTCCTGAAGCTGAGACTCTGACTCATATTACAGCTGGATTTACATTGGGGAGATGCAGGACAACTAAGTACCGTGACTTAAATGTGATTCTTCTAATGACATGCTGCCACTTTAGGTTTACTCTCACTGTTGATGACCATTAATTGCATTAGTATAAATTCTGTCGGCCGAGTGGGGAGTTTTTAAGTTGGGACTGTCGTTCCCGCATCTCTGCAACTTAAACCCAGTTTACACCTTTGTCCTGAAGGTCAAACTCTGACTCACATATTGATGTTTCCACTTAGCTTCGGTTGAAGACTTTTCCAGTTGCCTCCTTTTCTCAAGTTGCACTTTTTTGCCAGCTTGTAGTTTTCTTCACAGGCAGCTCCTCTGCTAGCCAAAATATGGTCAATATCGATGTGAGACTTTGTCTTTAAAGTGACATAATATATGTACAATGTAGACAGGAGACAATGTCACCAATAAATTGTCATGGTTTGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2422244 lncRNA downstream 1320 22794091 ~ 22794319 (-) True G2118394
TU2422208 lncRNA downstream 2883 22792419 ~ 22792756 (-) True G2118359
TU2422098 lncRNA downstream 118224 22677197 ~ 22677415 (-) True G2118251
TU2422097 lncRNA downstream 120710 22674664 ~ 22674929 (-) True G2118250
TU2422033 lncRNA downstream 193987 22585748 ~ 22601652 (-) True G2118194
TU2423183 lncRNA upstream 88444 22905184 ~ 22907635 (-) True G2119237
TU2423354 lncRNA upstream 216313 23033053 ~ 23038249 (-) True G2119393
TU2423355 lncRNA upstream 216490 23033230 ~ 23038411 (-) True G2119394
TU2423358 lncRNA upstream 217031 23033771 ~ 23039094 (-) True G2119395
TU2423362 lncRNA upstream 220070 23036810 ~ 23041327 (-) True G2119398
XM_036965986.1 mRNA downstream 268558 22288165 ~ 22527081 (-) True astn1
XM_036965976.1 mRNA downstream 268566 22286666 ~ 22527073 (-) False astn1
XM_036965977.1 mRNA downstream 268566 22286666 ~ 22527073 (-) False astn1
XM_036965979.1 mRNA downstream 268566 22286666 ~ 22527073 (-) False astn1
XM_036965980.1 mRNA downstream 268567 22286666 ~ 22527072 (-) False astn1
XM_021589528.2 mRNA upstream 5332 22822072 ~ 22828641 (-) True LOC110508750
XM_021589533.2 mRNA upstream 117520 22934260 ~ 22939565 (-) True LOC110508754
XM_021589537.2 mRNA upstream 225798 23042538 ~ 23055346 (-) True nmnat2
XM_036966220.1 mRNA upstream 287331 23104071 ~ 23118255 (-) False LOC110508760
XM_021589542.2 mRNA upstream 287331 23104071 ~ 23118323 (-) True LOC110508760
TU2422040 other downstream 187833 22594533 ~ 22607806 (-) True G2118200
TU2421094 other downstream 847381 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 508261 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1848134 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1913934 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2327322 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2381508 25198248 ~ 25274626 (-) True G2121457

Expression Profile